Hb_007574_070

Information

Type -
Description -
Location Contig7574: 56264-57607
Sequence    

Annotation

kegg
ID rcu:RCOM_0797300
description fatty acid desaturase, putative
nr
ID XP_002516430.1
description fatty acid desaturase, putative [Ricinus communis]
swissprot
ID Q43469
description Delta(8)-fatty-acid desaturase OS=Helianthus annuus GN=sld1 PE=1 SV=1
trembl
ID B9RRR1
description Fatty acid desaturase, putative OS=Ricinus communis GN=RCOM_0797300 PE=4 SV=1
Gene Ontology
ID GO:0016021
description delta -fatty-acid desaturase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57081: 55740-57746
cDNA
(Sanger)
(ID:Location)		 008_O17.ab1: 57219-57724 , 026_F14.ab1: 57072-57724 , 044_F19.ab1: 56947-57724

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007574_070 0.0 - - fatty acid desaturase, putative [Ricinus communis]
2 Hb_003071_070 0.1188325755 - - sucrose synthase 3 [Hevea brasiliensis]
3 Hb_010577_010 0.146243363 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
4 Hb_010931_140 0.1470223701 - - -
5 Hb_091349_010 0.1591748125 - - hypothetical protein EUGRSUZ_C02287 [Eucalyptus grandis]
6 Hb_002603_050 0.1612792397 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1-like isoform X1 [Jatropha curcas]
7 Hb_003052_180 0.1621051393 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
8 Hb_000671_130 0.1681600248 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
9 Hb_002157_270 0.1694532057 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
10 Hb_048702_010 0.1710808149 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
11 Hb_002129_020 0.173013195 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
12 Hb_122636_010 0.1743620978 - - dienelactone hydrolase family protein [Populus trichocarpa]
13 Hb_009674_010 0.1771947287 - - AAEL007687-PA [Aedes aegypti]
14 Hb_003994_300 0.1778285799 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002660_110 0.1812548895 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
16 Hb_032143_020 0.1832330075 - - hypothetical protein POPTR_0009s06310g [Populus trichocarpa]
17 Hb_000077_290 0.1853266542 - - conserved hypothetical protein [Ricinus communis]
18 Hb_033413_010 0.1859615413 - - Reticuline oxidase precursor, putative [Ricinus communis]
19 Hb_001999_100 0.1861207816 - - PREDICTED: UDP-glycosyltransferase 71D1-like [Jatropha curcas]
20 Hb_017014_010 0.1861221262 - - PREDICTED: syntaxin-132-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007574_070 Hb_007574_070 Hb_003071_070 Hb_003071_070 Hb_007574_070--Hb_003071_070 Hb_010577_010 Hb_010577_010 Hb_007574_070--Hb_010577_010 Hb_010931_140 Hb_010931_140 Hb_007574_070--Hb_010931_140 Hb_091349_010 Hb_091349_010 Hb_007574_070--Hb_091349_010 Hb_002603_050 Hb_002603_050 Hb_007574_070--Hb_002603_050 Hb_003052_180 Hb_003052_180 Hb_007574_070--Hb_003052_180 Hb_003071_070--Hb_003052_180 Hb_002660_110 Hb_002660_110 Hb_003071_070--Hb_002660_110 Hb_003071_070--Hb_002603_050 Hb_000622_350 Hb_000622_350 Hb_003071_070--Hb_000622_350 Hb_001842_010 Hb_001842_010 Hb_003071_070--Hb_001842_010 Hb_010577_010--Hb_091349_010 Hb_001969_020 Hb_001969_020 Hb_010577_010--Hb_001969_020 Hb_000683_100 Hb_000683_100 Hb_010577_010--Hb_000683_100 Hb_122636_010 Hb_122636_010 Hb_010577_010--Hb_122636_010 Hb_010577_010--Hb_010931_140 Hb_025477_070 Hb_025477_070 Hb_010931_140--Hb_025477_070 Hb_000369_120 Hb_000369_120 Hb_010931_140--Hb_000369_120 Hb_010931_140--Hb_001969_020 Hb_004466_060 Hb_004466_060 Hb_010931_140--Hb_004466_060 Hb_000671_130 Hb_000671_130 Hb_091349_010--Hb_000671_130 Hb_000107_110 Hb_000107_110 Hb_091349_010--Hb_000107_110 Hb_001894_070 Hb_001894_070 Hb_091349_010--Hb_001894_070 Hb_033152_070 Hb_033152_070 Hb_091349_010--Hb_033152_070 Hb_004881_030 Hb_004881_030 Hb_091349_010--Hb_004881_030 Hb_002603_050--Hb_004881_030 Hb_002603_050--Hb_003052_180 Hb_001104_130 Hb_001104_130 Hb_002603_050--Hb_001104_130 Hb_009661_030 Hb_009661_030 Hb_002603_050--Hb_009661_030 Hb_000004_020 Hb_000004_020 Hb_002603_050--Hb_000004_020 Hb_000032_070 Hb_000032_070 Hb_002603_050--Hb_000032_070 Hb_003052_180--Hb_001842_010 Hb_003052_180--Hb_033152_070 Hb_003052_180--Hb_004881_030 Hb_001946_180 Hb_001946_180 Hb_003052_180--Hb_001946_180 Hb_005218_020 Hb_005218_020 Hb_003052_180--Hb_005218_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.0439 10.4393 36.5282 253.376 23.8184 52.6449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.8381 11.5263 73.0255 43.2489 95.5732

CAGE analysis