Hb_002603_050

Information

Type -
Description -
Location Contig2603: 30112-33326
Sequence    

Annotation

kegg
ID pop:POPTR_0010s19630g
description POPTRDRAFT_659517; peptidyl-prolyl cis-trans isomerase family protein
nr
ID XP_012087501.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1-like isoform X1 [Jatropha curcas]
swissprot
ID Q8L8W5
description Peptidyl-prolyl cis-trans isomerase CYP21-2 OS=Arabidopsis thaliana GN=CYP21-2 PE=2 SV=1
trembl
ID A0A067LC44
description Peptidyl-prolyl cis-trans isomerase OS=Jatropha curcas GN=JCGZ_01273 PE=3 SV=1
Gene Ontology
ID GO:0005768
description peptidyl-prolyl cis-trans isomerase cyp20-1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27127: 30159-33282 , PASA_asmbl_27128: 30159-32148 , PASA_asmbl_27129: 30166-33285 , PASA_asmbl_27130: 30180-33266 , PASA_asmbl_27131: 31042-31481
cDNA
(Sanger)
(ID:Location)		 022_B08.ab1: 30166-33148 , 029_L03.ab1: 30166-33157 , 043_G13.ab1: 30166-33204 , 053_E24.ab1: 30159-31957

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002603_050 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1-like isoform X1 [Jatropha curcas]
2 Hb_004881_030 0.0771166948 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
3 Hb_003052_180 0.0986631866 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
4 Hb_001104_130 0.1034630447 - - C-14 sterol reductase, putative [Ricinus communis]
5 Hb_009661_030 0.1081440064 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
6 Hb_000004_020 0.1179953301 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000032_070 0.118457694 - - hypothetical protein POPTR_0003s13760g [Populus trichocarpa]
8 Hb_005218_020 0.118502465 - - Uncharacterized protein isoform 3 [Theobroma cacao]
9 Hb_002150_040 0.1199073579 - - PREDICTED: CMP-sialic acid transporter 1 isoform X3 [Jatropha curcas]
10 Hb_000107_110 0.1203069145 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_002226_080 0.1204258817 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
12 Hb_004129_140 0.121611691 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Jatropha curcas]
13 Hb_003071_070 0.1225948303 - - sucrose synthase 3 [Hevea brasiliensis]
14 Hb_000014_040 0.1227096248 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000136_100 0.1228876305 - - PREDICTED: syntaxin-61 [Jatropha curcas]
16 Hb_003529_030 0.1251568993 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
17 Hb_007765_040 0.1252291244 - - Cytosolic enolase isoform 3 [Theobroma cacao]
18 Hb_002902_130 0.1254958732 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
19 Hb_003141_070 0.1277361874 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
20 Hb_000028_600 0.1281431356 - - glutaredoxin-1, grx1, putative [Ricinus communis]

Gene co-expression network

sample Hb_002603_050 Hb_002603_050 Hb_004881_030 Hb_004881_030 Hb_002603_050--Hb_004881_030 Hb_003052_180 Hb_003052_180 Hb_002603_050--Hb_003052_180 Hb_001104_130 Hb_001104_130 Hb_002603_050--Hb_001104_130 Hb_009661_030 Hb_009661_030 Hb_002603_050--Hb_009661_030 Hb_000004_020 Hb_000004_020 Hb_002603_050--Hb_000004_020 Hb_000032_070 Hb_000032_070 Hb_002603_050--Hb_000032_070 Hb_004881_030--Hb_001104_130 Hb_000107_110 Hb_000107_110 Hb_004881_030--Hb_000107_110 Hb_004881_030--Hb_003052_180 Hb_033152_070 Hb_033152_070 Hb_004881_030--Hb_033152_070 Hb_000928_190 Hb_000928_190 Hb_004881_030--Hb_000928_190 Hb_001842_010 Hb_001842_010 Hb_003052_180--Hb_001842_010 Hb_003052_180--Hb_033152_070 Hb_003071_070 Hb_003071_070 Hb_003052_180--Hb_003071_070 Hb_001946_180 Hb_001946_180 Hb_003052_180--Hb_001946_180 Hb_005218_020 Hb_005218_020 Hb_003052_180--Hb_005218_020 Hb_001104_130--Hb_000107_110 Hb_002226_080 Hb_002226_080 Hb_001104_130--Hb_002226_080 Hb_001104_130--Hb_009661_030 Hb_000014_040 Hb_000014_040 Hb_001104_130--Hb_000014_040 Hb_001104_130--Hb_000004_020 Hb_000359_310 Hb_000359_310 Hb_009661_030--Hb_000359_310 Hb_005800_030 Hb_005800_030 Hb_009661_030--Hb_005800_030 Hb_004129_140 Hb_004129_140 Hb_009661_030--Hb_004129_140 Hb_003878_200 Hb_003878_200 Hb_009661_030--Hb_003878_200 Hb_019181_030 Hb_019181_030 Hb_009661_030--Hb_019181_030 Hb_012340_070 Hb_012340_070 Hb_000004_020--Hb_012340_070 Hb_000004_020--Hb_002226_080 Hb_001662_100 Hb_001662_100 Hb_000004_020--Hb_001662_100 Hb_000056_130 Hb_000056_130 Hb_000004_020--Hb_000056_130 Hb_009569_040 Hb_009569_040 Hb_000004_020--Hb_009569_040 Hb_004157_100 Hb_004157_100 Hb_000004_020--Hb_004157_100 Hb_009529_040 Hb_009529_040 Hb_000032_070--Hb_009529_040 Hb_001018_110 Hb_001018_110 Hb_000032_070--Hb_001018_110 Hb_002150_040 Hb_002150_040 Hb_000032_070--Hb_002150_040 Hb_003141_070 Hb_003141_070 Hb_000032_070--Hb_003141_070 Hb_002631_070 Hb_002631_070 Hb_000032_070--Hb_002631_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.1939 2.03472 4.47463 24.7004 6.83879 7.9939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.27894 5.23067 6.79823 8.16308 12.9309

CAGE analysis