Hb_019181_030

Information

Type -
Description -
Location Contig19181: 35036-37620
Sequence    

Annotation

kegg
ID pxb:103938156
description conserved oligomeric Golgi complex subunit 6-like
nr
ID XP_009346427.1
description PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID A0A0A9PTF5
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0017119
description conserved oligomeric golgi complex subunit 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19130: 34895-58081 , PASA_asmbl_19133: 35328-58081
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019181_030 0.0 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
2 Hb_013394_050 0.0849235465 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
3 Hb_000152_600 0.0886556409 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
4 Hb_007390_020 0.0939246472 - - PREDICTED: protein FMP32, mitochondrial-like [Populus euphratica]
5 Hb_010368_050 0.0972981899 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
6 Hb_001609_040 0.1010915109 - - hypothetical protein POPTR_0017s05650g [Populus trichocarpa]
7 Hb_000197_020 0.1026087419 - - PREDICTED: protein RER1A [Jatropha curcas]
8 Hb_009661_030 0.1027330244 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
9 Hb_007894_010 0.1042915222 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
10 Hb_004032_030 0.1051580194 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
11 Hb_000127_140 0.1054735198 - - transporter-related family protein [Populus trichocarpa]
12 Hb_005993_010 0.1066968681 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
13 Hb_004055_120 0.1071289492 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
14 Hb_010407_140 0.1088774525 - - PREDICTED: malate dehydrogenase [Jatropha curcas]
15 Hb_002133_020 0.1097548839 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012796_020 0.1119014903 - - PREDICTED: ADP-ribosylation factor 1 [Prunus mume]
17 Hb_000384_070 0.1133101739 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008147_090 0.113808216 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000402_130 0.1151195786 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
20 Hb_004176_070 0.1160372667 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_019181_030 Hb_019181_030 Hb_013394_050 Hb_013394_050 Hb_019181_030--Hb_013394_050 Hb_000152_600 Hb_000152_600 Hb_019181_030--Hb_000152_600 Hb_007390_020 Hb_007390_020 Hb_019181_030--Hb_007390_020 Hb_010368_050 Hb_010368_050 Hb_019181_030--Hb_010368_050 Hb_001609_040 Hb_001609_040 Hb_019181_030--Hb_001609_040 Hb_000197_020 Hb_000197_020 Hb_019181_030--Hb_000197_020 Hb_000069_640 Hb_000069_640 Hb_013394_050--Hb_000069_640 Hb_013394_050--Hb_000197_020 Hb_000244_170 Hb_000244_170 Hb_013394_050--Hb_000244_170 Hb_000742_020 Hb_000742_020 Hb_013394_050--Hb_000742_020 Hb_004055_120 Hb_004055_120 Hb_013394_050--Hb_004055_120 Hb_081599_010 Hb_081599_010 Hb_000152_600--Hb_081599_010 Hb_005993_010 Hb_005993_010 Hb_000152_600--Hb_005993_010 Hb_000072_300 Hb_000072_300 Hb_000152_600--Hb_000072_300 Hb_000130_270 Hb_000130_270 Hb_000152_600--Hb_000130_270 Hb_000152_600--Hb_000069_640 Hb_007390_020--Hb_000152_600 Hb_005054_220 Hb_005054_220 Hb_007390_020--Hb_005054_220 Hb_000913_040 Hb_000913_040 Hb_007390_020--Hb_000913_040 Hb_004176_070 Hb_004176_070 Hb_007390_020--Hb_004176_070 Hb_007390_020--Hb_010368_050 Hb_001951_130 Hb_001951_130 Hb_010368_050--Hb_001951_130 Hb_000127_140 Hb_000127_140 Hb_010368_050--Hb_000127_140 Hb_010407_140 Hb_010407_140 Hb_010368_050--Hb_010407_140 Hb_000392_340 Hb_000392_340 Hb_010368_050--Hb_000392_340 Hb_083380_020 Hb_083380_020 Hb_010368_050--Hb_083380_020 Hb_001609_040--Hb_005993_010 Hb_001609_040--Hb_004055_120 Hb_001609_040--Hb_013394_050 Hb_001609_040--Hb_000742_020 Hb_001609_040--Hb_000152_600 Hb_000066_030 Hb_000066_030 Hb_000197_020--Hb_000066_030 Hb_003998_040 Hb_003998_040 Hb_000197_020--Hb_003998_040 Hb_000197_020--Hb_004055_120 Hb_000705_230 Hb_000705_230 Hb_000197_020--Hb_000705_230 Hb_000197_020--Hb_010407_140 Hb_011214_160 Hb_011214_160 Hb_000197_020--Hb_011214_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.7497 3.79726 10.2632 24.2288 4.4485 6.70286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.28065 9.0981 6.4786 5.92282 6.70469

CAGE analysis