Hb_010368_050

Information

Type -
Description -
Location Contig10368: 32570-37743
Sequence    

Annotation

kegg
ID cic:CICLE_v10026430mg
description hypothetical protein
nr
ID XP_012067468.1
description PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
swissprot
ID O09101
description Phosphatidylinositol-glycan biosynthesis class F protein OS=Mus musculus GN=Pigf PE=1 SV=1
trembl
ID A0A067L0I8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26965 PE=4 SV=1
Gene Ontology
ID GO:0005789
description phosphatidylinositol-glycan biosynthesis class f protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01387: 32716-37587 , PASA_asmbl_01388: 32716-37824
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010368_050 0.0 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
2 Hb_001951_130 0.0817405014 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
3 Hb_000127_140 0.0881530464 - - transporter-related family protein [Populus trichocarpa]
4 Hb_019181_030 0.0972981899 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
5 Hb_010407_140 0.0993851413 - - PREDICTED: malate dehydrogenase [Jatropha curcas]
6 Hb_000392_340 0.0998803403 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
7 Hb_083380_020 0.1002133088 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
8 Hb_007894_010 0.1020860675 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
9 Hb_008147_090 0.1035489225 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000152_600 0.1037039892 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
11 Hb_000062_330 0.1063288939 - - unknown [Lotus japonicus]
12 Hb_166574_010 0.1106955134 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
13 Hb_000916_070 0.1117318505 - - PREDICTED: sister chromatid cohesion protein DCC1-like [Jatropha curcas]
14 Hb_000181_350 0.111895187 - - PREDICTED: uncharacterized protein LOC105111090 [Populus euphratica]
15 Hb_004176_070 0.1136366517 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X1 [Jatropha curcas]
16 Hb_006570_160 0.1163795596 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
17 Hb_002960_150 0.1167115978 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
18 Hb_000832_190 0.116831376 - - Rab3 [Hevea brasiliensis]
19 Hb_013394_050 0.117362819 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
20 Hb_002157_120 0.1188448624 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010368_050 Hb_010368_050 Hb_001951_130 Hb_001951_130 Hb_010368_050--Hb_001951_130 Hb_000127_140 Hb_000127_140 Hb_010368_050--Hb_000127_140 Hb_019181_030 Hb_019181_030 Hb_010368_050--Hb_019181_030 Hb_010407_140 Hb_010407_140 Hb_010368_050--Hb_010407_140 Hb_000392_340 Hb_000392_340 Hb_010368_050--Hb_000392_340 Hb_083380_020 Hb_083380_020 Hb_010368_050--Hb_083380_020 Hb_001951_130--Hb_000127_140 Hb_001951_130--Hb_000392_340 Hb_005054_080 Hb_005054_080 Hb_001951_130--Hb_005054_080 Hb_008147_090 Hb_008147_090 Hb_001951_130--Hb_008147_090 Hb_000062_330 Hb_000062_330 Hb_001951_130--Hb_000062_330 Hb_007894_010 Hb_007894_010 Hb_000127_140--Hb_007894_010 Hb_000127_140--Hb_008147_090 Hb_001195_060 Hb_001195_060 Hb_000127_140--Hb_001195_060 Hb_000666_100 Hb_000666_100 Hb_000127_140--Hb_000666_100 Hb_002184_090 Hb_002184_090 Hb_000127_140--Hb_002184_090 Hb_013394_050 Hb_013394_050 Hb_019181_030--Hb_013394_050 Hb_000152_600 Hb_000152_600 Hb_019181_030--Hb_000152_600 Hb_007390_020 Hb_007390_020 Hb_019181_030--Hb_007390_020 Hb_001609_040 Hb_001609_040 Hb_019181_030--Hb_001609_040 Hb_000197_020 Hb_000197_020 Hb_019181_030--Hb_000197_020 Hb_010407_140--Hb_007894_010 Hb_001633_080 Hb_001633_080 Hb_010407_140--Hb_001633_080 Hb_010407_140--Hb_000197_020 Hb_006570_160 Hb_006570_160 Hb_010407_140--Hb_006570_160 Hb_010407_140--Hb_000127_140 Hb_011282_060 Hb_011282_060 Hb_010407_140--Hb_011282_060 Hb_000392_340--Hb_005054_080 Hb_002681_200 Hb_002681_200 Hb_000392_340--Hb_002681_200 Hb_000392_340--Hb_000127_140 Hb_180343_010 Hb_180343_010 Hb_000392_340--Hb_180343_010 Hb_000832_190 Hb_000832_190 Hb_000392_340--Hb_000832_190 Hb_083380_020--Hb_008147_090 Hb_007101_110 Hb_007101_110 Hb_083380_020--Hb_007101_110 Hb_083380_020--Hb_001951_130 Hb_000181_350 Hb_000181_350 Hb_083380_020--Hb_000181_350 Hb_001511_260 Hb_001511_260 Hb_083380_020--Hb_001511_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.87776 1.97375 10.9141 13.5205 3.15521 6.04914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.91013 6.88402 4.66577 4.19387 5.18547

CAGE analysis