Hb_005054_080

Information

Type transcription factor
Description TF Family: LIM
Location Contig5054: 62792-67796
Sequence    

Annotation

kegg
ID rcu:RCOM_0498430
description Pollen-specific protein SF3, putative
nr
ID XP_002530411.1
description Pollen-specific protein SF3, putative [Ricinus communis]
swissprot
ID Q9M047
description LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana GN=WLIM2B PE=1 SV=1
trembl
ID B9SWP2
description Pollen-specific protein SF3, putative OS=Ricinus communis GN=RCOM_0498430 PE=4 SV=1
Gene Ontology
ID GO:0008270
description pollen-specific protein sf3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46054: 62852-67416 , PASA_asmbl_46055: 63212-67194 , PASA_asmbl_46056: 63114-67412 , PASA_asmbl_46058: 65100-65240
cDNA
(Sanger)
(ID:Location)		 014_E04.ab1: 63199-67416 , 019_C01.ab1: 63114-67412 , 037_J15.ab1: 63228-67412

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_080 0.0 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
2 Hb_000392_340 0.0619272204 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
3 Hb_004032_030 0.0826492999 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
4 Hb_002298_030 0.0835768971 - - PREDICTED: coenzyme Q-binding protein COQ10 homolog, mitochondrial [Jatropha curcas]
5 Hb_005695_120 0.0852068485 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
6 Hb_000608_050 0.0923045679 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
7 Hb_005765_050 0.0931154582 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
8 Hb_001799_030 0.0931403213 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
9 Hb_001951_130 0.0985717681 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
10 Hb_002681_200 0.0986030444 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
11 Hb_000127_140 0.0988876636 - - transporter-related family protein [Populus trichocarpa]
12 Hb_000783_010 0.1023168323 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
13 Hb_052805_010 0.1024100059 - - hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
14 Hb_000510_300 0.1026420837 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
15 Hb_002304_150 0.1033254913 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
16 Hb_001195_060 0.1036056955 - - Protein yrdA, putative [Ricinus communis]
17 Hb_006618_120 0.1049815758 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
18 Hb_017895_040 0.1056309505 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
19 Hb_148121_040 0.1066693595 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
20 Hb_000086_140 0.1071336688 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]

Gene co-expression network

sample Hb_005054_080 Hb_005054_080 Hb_000392_340 Hb_000392_340 Hb_005054_080--Hb_000392_340 Hb_004032_030 Hb_004032_030 Hb_005054_080--Hb_004032_030 Hb_002298_030 Hb_002298_030 Hb_005054_080--Hb_002298_030 Hb_005695_120 Hb_005695_120 Hb_005054_080--Hb_005695_120 Hb_000608_050 Hb_000608_050 Hb_005054_080--Hb_000608_050 Hb_005765_050 Hb_005765_050 Hb_005054_080--Hb_005765_050 Hb_002681_200 Hb_002681_200 Hb_000392_340--Hb_002681_200 Hb_001951_130 Hb_001951_130 Hb_000392_340--Hb_001951_130 Hb_000127_140 Hb_000127_140 Hb_000392_340--Hb_000127_140 Hb_180343_010 Hb_180343_010 Hb_000392_340--Hb_180343_010 Hb_000832_190 Hb_000832_190 Hb_000392_340--Hb_000832_190 Hb_004032_030--Hb_002298_030 Hb_004032_030--Hb_005695_120 Hb_000417_100 Hb_000417_100 Hb_004032_030--Hb_000417_100 Hb_004032_030--Hb_000392_340 Hb_003929_270 Hb_003929_270 Hb_004032_030--Hb_003929_270 Hb_006618_120 Hb_006618_120 Hb_002298_030--Hb_006618_120 Hb_002298_030--Hb_005695_120 Hb_154948_040 Hb_154948_040 Hb_002298_030--Hb_154948_040 Hb_000300_630 Hb_000300_630 Hb_002298_030--Hb_000300_630 Hb_052805_010 Hb_052805_010 Hb_005695_120--Hb_052805_010 Hb_005695_120--Hb_003929_270 Hb_000264_110 Hb_000264_110 Hb_005695_120--Hb_000264_110 Hb_000608_050--Hb_005765_050 Hb_000220_100 Hb_000220_100 Hb_000608_050--Hb_000220_100 Hb_148121_040 Hb_148121_040 Hb_000608_050--Hb_148121_040 Hb_000086_140 Hb_000086_140 Hb_000608_050--Hb_000086_140 Hb_000805_240 Hb_000805_240 Hb_000608_050--Hb_000805_240 Hb_004078_040 Hb_004078_040 Hb_000608_050--Hb_004078_040 Hb_000173_410 Hb_000173_410 Hb_005765_050--Hb_000173_410 Hb_001300_150 Hb_001300_150 Hb_005765_050--Hb_001300_150 Hb_000454_090 Hb_000454_090 Hb_005765_050--Hb_000454_090 Hb_008841_020 Hb_008841_020 Hb_005765_050--Hb_008841_020 Hb_005765_050--Hb_004078_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.2447 6.49358 21.7926 33.4436 7.95159 11.0691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.9997 21.9324 19.7726 13.2388 9.86021

CAGE analysis