Hb_002681_200

Information

Type -
Description -
Location Contig2681: 147337-152643
Sequence    

Annotation

kegg
ID rcu:RCOM_0532660
description copine, putative
nr
ID XP_012071725.1
description PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
swissprot
ID Q9LY87
description E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1
trembl
ID A0A067LNG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10230 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase rglg2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27939: 147401-152713
cDNA
(Sanger)
(ID:Location)		 013_E24.ab1: 147401-150291

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002681_200 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
2 Hb_000608_050 0.0791638369 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
3 Hb_000392_340 0.0822840121 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
4 Hb_148121_040 0.0854870863 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
5 Hb_005765_050 0.092527365 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
6 Hb_002863_030 0.0947791087 - - unknown [Populus trichocarpa x Populus deltoides]
7 Hb_005054_210 0.0952411519 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]
8 Hb_000849_130 0.0953217744 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
9 Hb_005054_080 0.0986030444 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
10 Hb_004800_100 0.1035634011 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003362_030 0.1058942961 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
12 Hb_000174_210 0.1072846377 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
13 Hb_000803_200 0.1098290767 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
14 Hb_002374_080 0.1106788023 - - PREDICTED: chloroplast processing peptidase-like isoform X1 [Jatropha curcas]
15 Hb_004044_040 0.1117497018 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
16 Hb_008245_010 0.1139690783 - - PREDICTED: protein NEDD1 [Jatropha curcas]
17 Hb_006816_260 0.1148423536 - - hypothetical protein JCGZ_23244 [Jatropha curcas]
18 Hb_003622_040 0.1149472484 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
19 Hb_020025_040 0.1150905645 - - sodium-bile acid cotransporter, putative [Ricinus communis]
20 Hb_006326_040 0.1156326441 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002681_200 Hb_002681_200 Hb_000608_050 Hb_000608_050 Hb_002681_200--Hb_000608_050 Hb_000392_340 Hb_000392_340 Hb_002681_200--Hb_000392_340 Hb_148121_040 Hb_148121_040 Hb_002681_200--Hb_148121_040 Hb_005765_050 Hb_005765_050 Hb_002681_200--Hb_005765_050 Hb_002863_030 Hb_002863_030 Hb_002681_200--Hb_002863_030 Hb_005054_210 Hb_005054_210 Hb_002681_200--Hb_005054_210 Hb_000608_050--Hb_005765_050 Hb_000220_100 Hb_000220_100 Hb_000608_050--Hb_000220_100 Hb_000608_050--Hb_148121_040 Hb_000086_140 Hb_000086_140 Hb_000608_050--Hb_000086_140 Hb_000805_240 Hb_000805_240 Hb_000608_050--Hb_000805_240 Hb_004078_040 Hb_004078_040 Hb_000608_050--Hb_004078_040 Hb_005054_080 Hb_005054_080 Hb_000392_340--Hb_005054_080 Hb_001951_130 Hb_001951_130 Hb_000392_340--Hb_001951_130 Hb_000127_140 Hb_000127_140 Hb_000392_340--Hb_000127_140 Hb_180343_010 Hb_180343_010 Hb_000392_340--Hb_180343_010 Hb_000832_190 Hb_000832_190 Hb_000392_340--Hb_000832_190 Hb_000638_250 Hb_000638_250 Hb_148121_040--Hb_000638_250 Hb_004696_080 Hb_004696_080 Hb_148121_040--Hb_004696_080 Hb_152784_010 Hb_152784_010 Hb_148121_040--Hb_152784_010 Hb_148121_040--Hb_005054_210 Hb_000403_060 Hb_000403_060 Hb_148121_040--Hb_000403_060 Hb_000173_410 Hb_000173_410 Hb_005765_050--Hb_000173_410 Hb_001300_150 Hb_001300_150 Hb_005765_050--Hb_001300_150 Hb_000454_090 Hb_000454_090 Hb_005765_050--Hb_000454_090 Hb_008841_020 Hb_008841_020 Hb_005765_050--Hb_008841_020 Hb_005765_050--Hb_004078_040 Hb_002863_030--Hb_000608_050 Hb_000803_200 Hb_000803_200 Hb_002863_030--Hb_000803_200 Hb_000849_130 Hb_000849_130 Hb_002863_030--Hb_000849_130 Hb_002301_160 Hb_002301_160 Hb_002863_030--Hb_002301_160 Hb_002863_030--Hb_000392_340 Hb_003622_040 Hb_003622_040 Hb_005054_210--Hb_003622_040 Hb_000174_210 Hb_000174_210 Hb_005054_210--Hb_000174_210 Hb_005054_210--Hb_005765_050 Hb_076233_040 Hb_076233_040 Hb_005054_210--Hb_076233_040 Hb_000045_310 Hb_000045_310 Hb_005054_210--Hb_000045_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.12428 4.14367 10.6265 15.6251 2.94146 5.46419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.738 12.3369 13.4032 8.70029 3.86328

CAGE analysis