Hb_002863_030

Information

Type -
Description -
Location Contig2863: 17487-19175
Sequence    

Annotation

kegg
ID rcu:RCOM_1443230
description hypothetical protein
nr
ID ABK96444.1
description unknown [Populus trichocarpa x Populus deltoides]
swissprot
ID -
description -
trembl
ID A9PJ91
description Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29884: 17573-19142
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002863_030 0.0 - - unknown [Populus trichocarpa x Populus deltoides]
2 Hb_002681_200 0.0947791087 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
3 Hb_000608_050 0.1022648631 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
4 Hb_000803_200 0.1172229881 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
5 Hb_000849_130 0.1178964652 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
6 Hb_002301_160 0.1231726103 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
7 Hb_000392_340 0.1246488181 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
8 Hb_148121_040 0.1271408699 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
9 Hb_017131_010 0.1275077759 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
10 Hb_033594_080 0.1288243322 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
11 Hb_005765_050 0.1301735694 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
12 Hb_002374_080 0.1312012892 - - PREDICTED: chloroplast processing peptidase-like isoform X1 [Jatropha curcas]
13 Hb_002045_070 0.1344698956 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
14 Hb_000964_030 0.1357541296 - - ADP/ATP carrier 2 [Theobroma cacao]
15 Hb_004800_100 0.1359273708 - - conserved hypothetical protein [Ricinus communis]
16 Hb_013394_050 0.136718566 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
17 Hb_000009_290 0.1371387562 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
18 Hb_000110_120 0.1379066845 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
19 Hb_000086_140 0.1388249851 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
20 Hb_002249_070 0.1389281614 - - gcn4-complementing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002863_030 Hb_002863_030 Hb_002681_200 Hb_002681_200 Hb_002863_030--Hb_002681_200 Hb_000608_050 Hb_000608_050 Hb_002863_030--Hb_000608_050 Hb_000803_200 Hb_000803_200 Hb_002863_030--Hb_000803_200 Hb_000849_130 Hb_000849_130 Hb_002863_030--Hb_000849_130 Hb_002301_160 Hb_002301_160 Hb_002863_030--Hb_002301_160 Hb_000392_340 Hb_000392_340 Hb_002863_030--Hb_000392_340 Hb_002681_200--Hb_000608_050 Hb_002681_200--Hb_000392_340 Hb_148121_040 Hb_148121_040 Hb_002681_200--Hb_148121_040 Hb_005765_050 Hb_005765_050 Hb_002681_200--Hb_005765_050 Hb_005054_210 Hb_005054_210 Hb_002681_200--Hb_005054_210 Hb_000608_050--Hb_005765_050 Hb_000220_100 Hb_000220_100 Hb_000608_050--Hb_000220_100 Hb_000608_050--Hb_148121_040 Hb_000086_140 Hb_000086_140 Hb_000608_050--Hb_000086_140 Hb_000805_240 Hb_000805_240 Hb_000608_050--Hb_000805_240 Hb_004078_040 Hb_004078_040 Hb_000608_050--Hb_004078_040 Hb_000803_200--Hb_000849_130 Hb_006326_040 Hb_006326_040 Hb_000803_200--Hb_006326_040 Hb_055062_020 Hb_055062_020 Hb_000803_200--Hb_055062_020 Hb_001511_260 Hb_001511_260 Hb_000803_200--Hb_001511_260 Hb_007113_070 Hb_007113_070 Hb_000803_200--Hb_007113_070 Hb_000045_310 Hb_000045_310 Hb_000803_200--Hb_000045_310 Hb_000009_290 Hb_000009_290 Hb_000849_130--Hb_000009_290 Hb_154948_040 Hb_154948_040 Hb_000849_130--Hb_154948_040 Hb_002105_100 Hb_002105_100 Hb_000849_130--Hb_002105_100 Hb_045003_010 Hb_045003_010 Hb_000849_130--Hb_045003_010 Hb_002303_060 Hb_002303_060 Hb_000849_130--Hb_002303_060 Hb_000783_010 Hb_000783_010 Hb_000849_130--Hb_000783_010 Hb_002045_070 Hb_002045_070 Hb_002301_160--Hb_002045_070 Hb_000110_120 Hb_000110_120 Hb_002301_160--Hb_000110_120 Hb_002301_160--Hb_000009_290 Hb_004627_030 Hb_004627_030 Hb_002301_160--Hb_004627_030 Hb_002042_150 Hb_002042_150 Hb_002301_160--Hb_002042_150 Hb_001489_110 Hb_001489_110 Hb_002301_160--Hb_001489_110 Hb_005054_080 Hb_005054_080 Hb_000392_340--Hb_005054_080 Hb_001951_130 Hb_001951_130 Hb_000392_340--Hb_001951_130 Hb_000127_140 Hb_000127_140 Hb_000392_340--Hb_000127_140 Hb_180343_010 Hb_180343_010 Hb_000392_340--Hb_180343_010 Hb_000832_190 Hb_000832_190 Hb_000392_340--Hb_000832_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.10388 13.5295 25.7716 42.8284 7.11099 16.7451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.3454 30.8156 35.0765 15.5001 9.11408

CAGE analysis