Hb_000110_120

Information

Type -
Description -
Location Contig110: 168113-176302
Sequence    

Annotation

kegg
ID fve:101298141
description ras-related protein RABE1a-like
nr
ID XP_004302754.1
description PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
swissprot
ID P28186
description Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1 SV=1
trembl
ID A0A0D2RVW0
description Gossypium raimondii chromosome 6, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_006G175600 PE=4 SV=1
Gene Ontology
ID GO:0005829
description ras-related protein rabe1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03043: 167802-176301 , PASA_asmbl_03045: 175476-175597 , PASA_asmbl_03046: 168281-168542 , PASA_asmbl_03047: 167806-176178
cDNA
(Sanger)
(ID:Location)		 006_G20.ab1: 168043-176253 , 026_E23.ab1: 168877-176253 , 030_O21.ab1: 168586-176253

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_120 0.0 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
2 Hb_002301_160 0.0619810125 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
3 Hb_005460_060 0.0783672016 - - PREDICTED: proteasome assembly chaperone 2 [Jatropha curcas]
4 Hb_012305_130 0.0835674353 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
5 Hb_000009_290 0.0981423117 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
6 Hb_004627_030 0.0984720012 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
7 Hb_000077_180 0.0984986448 - - -
8 Hb_021409_080 0.1000413732 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
9 Hb_028049_010 0.1038496645 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
10 Hb_002045_070 0.1054262141 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
11 Hb_001016_100 0.1091818069 - - PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
12 Hb_000392_340 0.1095437099 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
13 Hb_180343_010 0.1102914602 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
14 Hb_015057_020 0.1123298439 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
15 Hb_145880_020 0.1128418887 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
16 Hb_002042_150 0.1135070464 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
17 Hb_000428_060 0.1137501067 - - malate dehydrogenase, putative [Ricinus communis]
18 Hb_002110_100 0.1150817283 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
19 Hb_045003_010 0.1159319721 - - Stomatin-1, putative [Ricinus communis]
20 Hb_000563_200 0.1161455533 - - hypothetical protein JCGZ_18930 [Jatropha curcas]

Gene co-expression network

sample Hb_000110_120 Hb_000110_120 Hb_002301_160 Hb_002301_160 Hb_000110_120--Hb_002301_160 Hb_005460_060 Hb_005460_060 Hb_000110_120--Hb_005460_060 Hb_012305_130 Hb_012305_130 Hb_000110_120--Hb_012305_130 Hb_000009_290 Hb_000009_290 Hb_000110_120--Hb_000009_290 Hb_004627_030 Hb_004627_030 Hb_000110_120--Hb_004627_030 Hb_000077_180 Hb_000077_180 Hb_000110_120--Hb_000077_180 Hb_002045_070 Hb_002045_070 Hb_002301_160--Hb_002045_070 Hb_002301_160--Hb_000009_290 Hb_002301_160--Hb_004627_030 Hb_002042_150 Hb_002042_150 Hb_002301_160--Hb_002042_150 Hb_001489_110 Hb_001489_110 Hb_002301_160--Hb_001489_110 Hb_004984_030 Hb_004984_030 Hb_005460_060--Hb_004984_030 Hb_098315_020 Hb_098315_020 Hb_005460_060--Hb_098315_020 Hb_005460_060--Hb_000077_180 Hb_002060_010 Hb_002060_010 Hb_005460_060--Hb_002060_010 Hb_000946_090 Hb_000946_090 Hb_005460_060--Hb_000946_090 Hb_021409_080 Hb_021409_080 Hb_012305_130--Hb_021409_080 Hb_000964_030 Hb_000964_030 Hb_012305_130--Hb_000964_030 Hb_028049_010 Hb_028049_010 Hb_012305_130--Hb_028049_010 Hb_002110_100 Hb_002110_100 Hb_012305_130--Hb_002110_100 Hb_012305_130--Hb_004627_030 Hb_000849_130 Hb_000849_130 Hb_000009_290--Hb_000849_130 Hb_000327_380 Hb_000327_380 Hb_000009_290--Hb_000327_380 Hb_002303_060 Hb_002303_060 Hb_000009_290--Hb_002303_060 Hb_000009_290--Hb_002045_070 Hb_001410_060 Hb_001410_060 Hb_000009_290--Hb_001410_060 Hb_004800_100 Hb_004800_100 Hb_004627_030--Hb_004800_100 Hb_004627_030--Hb_021409_080 Hb_004627_030--Hb_002045_070 Hb_000300_430 Hb_000300_430 Hb_004627_030--Hb_000300_430 Hb_000377_120 Hb_000377_120 Hb_000077_180--Hb_000377_120 Hb_000077_180--Hb_001410_060 Hb_017491_020 Hb_017491_020 Hb_000077_180--Hb_017491_020 Hb_000077_180--Hb_000009_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1128 15.9734 37.9224 75.6482 9.12348 12.0796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.0362 60.2451 33.7106 31.6836 24.4692

CAGE analysis