Hb_098315_020

Information

Type -
Description -
Location Contig98315: 5144-7936
Sequence    

Annotation

kegg
ID cam:101488541
description uncharacterized LOC101488541
nr
ID EPS59096.1
description hypothetical protein M569_15712 [Genlisea aurea]
swissprot
ID Q10307
description Uncharacterized protein C6C3.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6C3.02c PE=4 SV=1
trembl
ID S8C3U7
description Uncharacterized protein OS=Genlisea aurea GN=M569_15712 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64489: 5109-7864 , PASA_asmbl_64490: 5202-5477 , PASA_asmbl_64492: 7089-7393
cDNA
(Sanger)
(ID:Location)		 001_P17.ab1: 5143-7799 , 005_N06.ab1: 5141-7760 , 005_N07.ab1: 5141-7837 , 015_A04.ab1: 5148-7799 , 025_N20.ab1: 5143-7799

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_098315_020 0.0 - - hypothetical protein M569_15712 [Genlisea aurea]
2 Hb_002060_010 0.0883480923 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
3 Hb_015299_030 0.0913648126 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
4 Hb_005460_060 0.0949291445 - - PREDICTED: proteasome assembly chaperone 2 [Jatropha curcas]
5 Hb_004984_030 0.0974146827 - - protein with unknown function [Ricinus communis]
6 Hb_001188_030 0.1015942167 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
7 Hb_001718_030 0.1037866203 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
8 Hb_001322_070 0.1039389864 - - protein with unknown function [Ricinus communis]
9 Hb_001431_080 0.1048228004 - - 40S ribosomal protein S11, putative [Ricinus communis]
10 Hb_001804_080 0.1056975893 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
11 Hb_002028_090 0.1088102481 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
12 Hb_003582_070 0.1108260912 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000946_090 0.1112514445 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
14 Hb_000077_180 0.1134589361 - - -
15 Hb_001234_070 0.1164190293 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein Sgpp [Populus euphratica]
16 Hb_040819_010 0.1164707615 - - protein phosphatase 2c, putative [Ricinus communis]
17 Hb_000155_160 0.1195670786 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
18 Hb_002686_180 0.1206674504 - - PREDICTED: early nodulin-93-like [Populus euphratica]
19 Hb_000009_290 0.1227386222 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
20 Hb_000110_120 0.127640414 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_098315_020 Hb_098315_020 Hb_002060_010 Hb_002060_010 Hb_098315_020--Hb_002060_010 Hb_015299_030 Hb_015299_030 Hb_098315_020--Hb_015299_030 Hb_005460_060 Hb_005460_060 Hb_098315_020--Hb_005460_060 Hb_004984_030 Hb_004984_030 Hb_098315_020--Hb_004984_030 Hb_001188_030 Hb_001188_030 Hb_098315_020--Hb_001188_030 Hb_001718_030 Hb_001718_030 Hb_098315_020--Hb_001718_030 Hb_002060_010--Hb_001718_030 Hb_002060_010--Hb_001188_030 Hb_006256_030 Hb_006256_030 Hb_002060_010--Hb_006256_030 Hb_006355_040 Hb_006355_040 Hb_002060_010--Hb_006355_040 Hb_000327_380 Hb_000327_380 Hb_002060_010--Hb_000327_380 Hb_015299_030--Hb_001188_030 Hb_001431_080 Hb_001431_080 Hb_015299_030--Hb_001431_080 Hb_002811_170 Hb_002811_170 Hb_015299_030--Hb_002811_170 Hb_000946_090 Hb_000946_090 Hb_015299_030--Hb_000946_090 Hb_001931_010 Hb_001931_010 Hb_015299_030--Hb_001931_010 Hb_000110_120 Hb_000110_120 Hb_005460_060--Hb_000110_120 Hb_005460_060--Hb_004984_030 Hb_000077_180 Hb_000077_180 Hb_005460_060--Hb_000077_180 Hb_005460_060--Hb_002060_010 Hb_005460_060--Hb_000946_090 Hb_000832_190 Hb_000832_190 Hb_004984_030--Hb_000832_190 Hb_002028_090 Hb_002028_090 Hb_004984_030--Hb_002028_090 Hb_000926_200 Hb_000926_200 Hb_004984_030--Hb_000926_200 Hb_004984_030--Hb_000946_090 Hb_040819_010 Hb_040819_010 Hb_004984_030--Hb_040819_010 Hb_001188_030--Hb_001718_030 Hb_000676_390 Hb_000676_390 Hb_001188_030--Hb_000676_390 Hb_001188_030--Hb_001431_080 Hb_001188_030--Hb_006355_040 Hb_001188_030--Hb_001931_010 Hb_001718_030--Hb_006355_040 Hb_001718_030--Hb_001431_080 Hb_001718_030--Hb_000676_390 Hb_006326_040 Hb_006326_040 Hb_001718_030--Hb_006326_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
96.1082 128.655 275.281 305.46 50.4584 61.5814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
166.391 504.811 139.165 141.521 116.81

CAGE analysis