Hb_015299_030

Information

Type -
Description -
Location Contig15299: 48775-53480
Sequence    

Annotation

kegg
ID rcu:RCOM_0491390
description proteasome subunit alpha type, putative (EC:3.4.25.1)
nr
ID XP_012081758.1
description PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
swissprot
ID Q9SXU1
description Proteasome subunit alpha type-7 OS=Cicer arietinum GN=PAD1 PE=2 SV=1
trembl
ID A0A067KBK8
description Proteasome subunit alpha type OS=Jatropha curcas GN=JCGZ_18802 PE=3 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit alpha type-7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13151: 48731-53453 , PASA_asmbl_13153: 49351-49640 , PASA_asmbl_13154: 51018-51237
cDNA
(Sanger)
(ID:Location)		 004_J11.ab1: 48787-53192 , 013_O16.ab1: 48787-53076 , 018_I02.ab1: 48786-50151 , 019_K16.ab1: 48789-53126 , 031_N06.ab1: 48792-53119 , 053_C23.ab1: 48787-53165

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015299_030 0.0 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
2 Hb_001188_030 0.0748240254 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
3 Hb_001431_080 0.0793842436 - - 40S ribosomal protein S11, putative [Ricinus communis]
4 Hb_002811_170 0.0819898037 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
5 Hb_000946_090 0.0852227265 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
6 Hb_001931_010 0.0890974995 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
7 Hb_098315_020 0.0913648126 - - hypothetical protein M569_15712 [Genlisea aurea]
8 Hb_001016_150 0.0925715959 - - Rop1 [Hevea brasiliensis]
9 Hb_001718_030 0.0932394755 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
10 Hb_000599_260 0.0964384983 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
11 Hb_000155_160 0.0966205151 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
12 Hb_003582_070 0.097178695 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000676_390 0.0977815034 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
14 Hb_002307_180 0.0992938451 - - PREDICTED: rRNA-processing protein EFG1 isoform X2 [Jatropha curcas]
15 Hb_001377_450 0.0997877044 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 2 isoform X1 [Jatropha curcas]
16 Hb_008071_020 0.1011232418 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
17 Hb_001804_080 0.101292325 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
18 Hb_004041_020 0.1038944946 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
19 Hb_026053_020 0.1045265205 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
20 Hb_006326_040 0.1050799021 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_015299_030 Hb_015299_030 Hb_001188_030 Hb_001188_030 Hb_015299_030--Hb_001188_030 Hb_001431_080 Hb_001431_080 Hb_015299_030--Hb_001431_080 Hb_002811_170 Hb_002811_170 Hb_015299_030--Hb_002811_170 Hb_000946_090 Hb_000946_090 Hb_015299_030--Hb_000946_090 Hb_001931_010 Hb_001931_010 Hb_015299_030--Hb_001931_010 Hb_098315_020 Hb_098315_020 Hb_015299_030--Hb_098315_020 Hb_001718_030 Hb_001718_030 Hb_001188_030--Hb_001718_030 Hb_000676_390 Hb_000676_390 Hb_001188_030--Hb_000676_390 Hb_001188_030--Hb_001431_080 Hb_006355_040 Hb_006355_040 Hb_001188_030--Hb_006355_040 Hb_001188_030--Hb_001931_010 Hb_001431_080--Hb_001718_030 Hb_132840_140 Hb_132840_140 Hb_001431_080--Hb_132840_140 Hb_000676_310 Hb_000676_310 Hb_001431_080--Hb_000676_310 Hb_001431_080--Hb_000676_390 Hb_007747_050 Hb_007747_050 Hb_002811_170--Hb_007747_050 Hb_000836_470 Hb_000836_470 Hb_002811_170--Hb_000836_470 Hb_002811_170--Hb_001931_010 Hb_001863_430 Hb_001863_430 Hb_002811_170--Hb_001863_430 Hb_001728_030 Hb_001728_030 Hb_002811_170--Hb_001728_030 Hb_001016_150 Hb_001016_150 Hb_002811_170--Hb_001016_150 Hb_001804_080 Hb_001804_080 Hb_000946_090--Hb_001804_080 Hb_000946_090--Hb_001931_010 Hb_000419_020 Hb_000419_020 Hb_000946_090--Hb_000419_020 Hb_006326_040 Hb_006326_040 Hb_000946_090--Hb_006326_040 Hb_032202_100 Hb_032202_100 Hb_000946_090--Hb_032202_100 Hb_002968_040 Hb_002968_040 Hb_000946_090--Hb_002968_040 Hb_008071_020 Hb_008071_020 Hb_001931_010--Hb_008071_020 Hb_001931_010--Hb_006326_040 Hb_001341_150 Hb_001341_150 Hb_001931_010--Hb_001341_150 Hb_000505_130 Hb_000505_130 Hb_001931_010--Hb_000505_130 Hb_000566_120 Hb_000566_120 Hb_001931_010--Hb_000566_120 Hb_001279_080 Hb_001279_080 Hb_001931_010--Hb_001279_080 Hb_002060_010 Hb_002060_010 Hb_098315_020--Hb_002060_010 Hb_005460_060 Hb_005460_060 Hb_098315_020--Hb_005460_060 Hb_004984_030 Hb_004984_030 Hb_098315_020--Hb_004984_030 Hb_098315_020--Hb_001188_030 Hb_098315_020--Hb_001718_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.7246 30.4613 101.453 83.9672 31.77 36.4717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.5548 177.18 45.8523 40.7523 45.2654

CAGE analysis