Hb_132840_140

Information

Type -
Description -
Location Contig132840: 95719-96843
Sequence    

Annotation

kegg
ID vvi:100249556
description 60S acidic ribosomal protein P1
nr
ID XP_002279082.1
description PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
swissprot
ID P52855
description 60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1
trembl
ID D7TVT2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g02780 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s acidic ribosomal protein p1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09364: 95747-97102
cDNA
(Sanger)
(ID:Location)		 003_H01.ab1: 95765-97126 , 021_L13.ab1: 95768-97101 , 036_F19.ab1: 95771-97102 , 046_N10.ab1: 95788-97099

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132840_140 0.0 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
2 Hb_001431_080 0.0869015624 - - 40S ribosomal protein S11, putative [Ricinus communis]
3 Hb_000134_320 0.0918768791 - - hypothetical protein PRUPE_ppa013450mg [Prunus persica]
4 Hb_000676_310 0.1042990964 - - BnaC09g40680D [Brassica napus]
5 Hb_004223_040 0.107562513 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
6 Hb_001188_030 0.110224062 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
7 Hb_015299_030 0.1112239374 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
8 Hb_007044_130 0.1131799678 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
9 Hb_002686_180 0.1146207028 - - PREDICTED: early nodulin-93-like [Populus euphratica]
10 Hb_000260_550 0.1146459392 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
11 Hb_011236_010 0.1158085043 - - hypothetical protein JCGZ_17006 [Jatropha curcas]
12 Hb_000035_370 0.1163048633 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000096_170 0.1184630144 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]
14 Hb_002811_170 0.1238305339 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
15 Hb_001143_220 0.1241888969 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
16 Hb_001718_030 0.1261507034 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
17 Hb_002783_270 0.1269995144 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
18 Hb_002307_180 0.1285310995 - - PREDICTED: rRNA-processing protein EFG1 isoform X2 [Jatropha curcas]
19 Hb_006925_040 0.128628708 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
20 Hb_001016_150 0.1300559872 - - Rop1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_132840_140 Hb_132840_140 Hb_001431_080 Hb_001431_080 Hb_132840_140--Hb_001431_080 Hb_000134_320 Hb_000134_320 Hb_132840_140--Hb_000134_320 Hb_000676_310 Hb_000676_310 Hb_132840_140--Hb_000676_310 Hb_004223_040 Hb_004223_040 Hb_132840_140--Hb_004223_040 Hb_001188_030 Hb_001188_030 Hb_132840_140--Hb_001188_030 Hb_015299_030 Hb_015299_030 Hb_132840_140--Hb_015299_030 Hb_001431_080--Hb_001188_030 Hb_001718_030 Hb_001718_030 Hb_001431_080--Hb_001718_030 Hb_001431_080--Hb_015299_030 Hb_001431_080--Hb_000676_310 Hb_000676_390 Hb_000676_390 Hb_001431_080--Hb_000676_390 Hb_001754_250 Hb_001754_250 Hb_000134_320--Hb_001754_250 Hb_002686_180 Hb_002686_180 Hb_000134_320--Hb_002686_180 Hb_003053_010 Hb_003053_010 Hb_000134_320--Hb_003053_010 Hb_000260_550 Hb_000260_550 Hb_000134_320--Hb_000260_550 Hb_002811_170 Hb_002811_170 Hb_000134_320--Hb_002811_170 Hb_000676_310--Hb_001718_030 Hb_000676_310--Hb_001188_030 Hb_006355_040 Hb_006355_040 Hb_000676_310--Hb_006355_040 Hb_011236_010 Hb_011236_010 Hb_000676_310--Hb_011236_010 Hb_004223_040--Hb_011236_010 Hb_008921_020 Hb_008921_020 Hb_004223_040--Hb_008921_020 Hb_012368_020 Hb_012368_020 Hb_004223_040--Hb_012368_020 Hb_007044_130 Hb_007044_130 Hb_004223_040--Hb_007044_130 Hb_000735_040 Hb_000735_040 Hb_004223_040--Hb_000735_040 Hb_000062_650 Hb_000062_650 Hb_004223_040--Hb_000062_650 Hb_001188_030--Hb_001718_030 Hb_001188_030--Hb_000676_390 Hb_001188_030--Hb_006355_040 Hb_001188_030--Hb_015299_030 Hb_001931_010 Hb_001931_010 Hb_001188_030--Hb_001931_010 Hb_015299_030--Hb_002811_170 Hb_000946_090 Hb_000946_090 Hb_015299_030--Hb_000946_090 Hb_015299_030--Hb_001931_010 Hb_098315_020 Hb_098315_020 Hb_015299_030--Hb_098315_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.1387 37.9612 104.585 56.2675 29.3533 44.2192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.686 226.025 57.6472 32.4573 28.7392

CAGE analysis