Hb_012368_020

Information

Type -
Description -
Location Contig12368: 7934-10607
Sequence    

Annotation

kegg
ID rcu:RCOM_0768740
description hypothetical protein
nr
ID XP_012093323.1
description PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LAT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19195 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07213: 7993-10562 , PASA_asmbl_07214: 8055-10563
cDNA
(Sanger)
(ID:Location)		 017_K11.ab1: 8055-10563 , 046_L05.ab1: 8014-10562 , 051_N24.ab1: 8014-10562

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012368_020 0.0 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
2 Hb_003641_020 0.0510746863 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
3 Hb_000975_320 0.0631425822 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
4 Hb_005511_160 0.0777172771 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
5 Hb_001314_100 0.0795080458 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
6 Hb_000062_650 0.0823376573 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
7 Hb_134949_020 0.0844468368 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
8 Hb_000438_220 0.0844992935 - - PREDICTED: uncharacterized protein LOC105649213 [Jatropha curcas]
9 Hb_001369_640 0.0847900441 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
10 Hb_000906_040 0.0863419413 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
11 Hb_004223_040 0.0863758061 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
12 Hb_000029_200 0.0872936618 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
13 Hb_008921_020 0.0891997575 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
14 Hb_011628_040 0.0915985518 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
15 Hb_003656_070 0.0917280273 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
16 Hb_003683_110 0.0918739432 - - JHL10I11.3 [Jatropha curcas]
17 Hb_010672_060 0.092370864 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
18 Hb_007044_130 0.0928635806 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
19 Hb_001047_230 0.0937864246 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_002768_030 0.0939081668 - - gaba(A) receptor-associated protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_012368_020 Hb_012368_020 Hb_003641_020 Hb_003641_020 Hb_012368_020--Hb_003641_020 Hb_000975_320 Hb_000975_320 Hb_012368_020--Hb_000975_320 Hb_005511_160 Hb_005511_160 Hb_012368_020--Hb_005511_160 Hb_001314_100 Hb_001314_100 Hb_012368_020--Hb_001314_100 Hb_000062_650 Hb_000062_650 Hb_012368_020--Hb_000062_650 Hb_134949_020 Hb_134949_020 Hb_012368_020--Hb_134949_020 Hb_003641_020--Hb_000062_650 Hb_001638_260 Hb_001638_260 Hb_003641_020--Hb_001638_260 Hb_000438_220 Hb_000438_220 Hb_003641_020--Hb_000438_220 Hb_003641_020--Hb_001314_100 Hb_012573_070 Hb_012573_070 Hb_003641_020--Hb_012573_070 Hb_000906_040 Hb_000906_040 Hb_000975_320--Hb_000906_040 Hb_002811_080 Hb_002811_080 Hb_000975_320--Hb_002811_080 Hb_000975_320--Hb_005511_160 Hb_011628_040 Hb_011628_040 Hb_000975_320--Hb_011628_040 Hb_004223_040 Hb_004223_040 Hb_000975_320--Hb_004223_040 Hb_005511_160--Hb_011628_040 Hb_002259_070 Hb_002259_070 Hb_005511_160--Hb_002259_070 Hb_001979_040 Hb_001979_040 Hb_005511_160--Hb_001979_040 Hb_003656_070 Hb_003656_070 Hb_005511_160--Hb_003656_070 Hb_003203_040 Hb_003203_040 Hb_005511_160--Hb_003203_040 Hb_007416_030 Hb_007416_030 Hb_005511_160--Hb_007416_030 Hb_001314_100--Hb_012573_070 Hb_001369_640 Hb_001369_640 Hb_001314_100--Hb_001369_640 Hb_168054_010 Hb_168054_010 Hb_001314_100--Hb_168054_010 Hb_165132_010 Hb_165132_010 Hb_001314_100--Hb_165132_010 Hb_000029_200 Hb_000029_200 Hb_001314_100--Hb_000029_200 Hb_001314_100--Hb_134949_020 Hb_000506_070 Hb_000506_070 Hb_000062_650--Hb_000506_070 Hb_008921_020 Hb_008921_020 Hb_000062_650--Hb_008921_020 Hb_007044_130 Hb_007044_130 Hb_000062_650--Hb_007044_130 Hb_000735_040 Hb_000735_040 Hb_000062_650--Hb_000735_040 Hb_002588_010 Hb_002588_010 Hb_000062_650--Hb_002588_010 Hb_134949_020--Hb_165132_010 Hb_001341_090 Hb_001341_090 Hb_134949_020--Hb_001341_090 Hb_033594_110 Hb_033594_110 Hb_134949_020--Hb_033594_110 Hb_000996_140 Hb_000996_140 Hb_134949_020--Hb_000996_140 Hb_002864_050 Hb_002864_050 Hb_134949_020--Hb_002864_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.9407 20.2075 24.3 23.3832 24.005 31.3031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.2886 105.595 38.069 13.36 8.61675

CAGE analysis