Hb_000906_040

Information

Type -
Description -
Location Contig906: 98025-101298
Sequence    

Annotation

kegg
ID tcc:TCM_021578
description hypothetical protein
nr
ID XP_012089743.1
description PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JS39
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00397 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62029: 98038-101356 , PASA_asmbl_62031: 98735-98993
cDNA
(Sanger)
(ID:Location)		 019_P19.ab1: 100214-101356 , 050_C06.ab1: 98220-101356 , 051_G20.ab1: 98093-101287

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000906_040 0.0 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
2 Hb_000975_320 0.0682844288 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
3 Hb_000574_160 0.0729769238 - - PREDICTED: arogenate dehydrogenase 2, chloroplastic [Jatropha curcas]
4 Hb_002235_350 0.0784350856 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
5 Hb_001780_040 0.084853015 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
6 Hb_002768_030 0.0850097528 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
7 Hb_012368_020 0.0863419413 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
8 Hb_000331_700 0.0866352585 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
9 Hb_005511_160 0.0866727467 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
10 Hb_000035_370 0.0896127737 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001047_230 0.0896666134 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_000699_090 0.0902704952 - - cyclophilin, putative [Ricinus communis]
13 Hb_000567_410 0.0913489823 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
14 Hb_000093_110 0.0923510135 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
15 Hb_002811_080 0.095364832 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
16 Hb_001979_040 0.09629226 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
17 Hb_003683_110 0.0967679895 - - JHL10I11.3 [Jatropha curcas]
18 Hb_002588_010 0.0968926531 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
19 Hb_005063_050 0.0972095584 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
20 Hb_006478_160 0.0979332844 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000906_040 Hb_000906_040 Hb_000975_320 Hb_000975_320 Hb_000906_040--Hb_000975_320 Hb_000574_160 Hb_000574_160 Hb_000906_040--Hb_000574_160 Hb_002235_350 Hb_002235_350 Hb_000906_040--Hb_002235_350 Hb_001780_040 Hb_001780_040 Hb_000906_040--Hb_001780_040 Hb_002768_030 Hb_002768_030 Hb_000906_040--Hb_002768_030 Hb_012368_020 Hb_012368_020 Hb_000906_040--Hb_012368_020 Hb_000975_320--Hb_012368_020 Hb_002811_080 Hb_002811_080 Hb_000975_320--Hb_002811_080 Hb_005511_160 Hb_005511_160 Hb_000975_320--Hb_005511_160 Hb_011628_040 Hb_011628_040 Hb_000975_320--Hb_011628_040 Hb_004223_040 Hb_004223_040 Hb_000975_320--Hb_004223_040 Hb_000574_160--Hb_002235_350 Hb_002259_070 Hb_002259_070 Hb_000574_160--Hb_002259_070 Hb_019253_030 Hb_019253_030 Hb_000574_160--Hb_019253_030 Hb_000029_200 Hb_000029_200 Hb_000574_160--Hb_000029_200 Hb_000574_160--Hb_001780_040 Hb_002235_350--Hb_001780_040 Hb_003540_240 Hb_003540_240 Hb_002235_350--Hb_003540_240 Hb_001979_040 Hb_001979_040 Hb_002235_350--Hb_001979_040 Hb_001484_070 Hb_001484_070 Hb_002235_350--Hb_001484_070 Hb_001780_040--Hb_002768_030 Hb_003683_110 Hb_003683_110 Hb_001780_040--Hb_003683_110 Hb_000025_620 Hb_000025_620 Hb_001780_040--Hb_000025_620 Hb_000127_180 Hb_000127_180 Hb_001780_040--Hb_000127_180 Hb_003226_100 Hb_003226_100 Hb_001780_040--Hb_003226_100 Hb_002768_030--Hb_003683_110 Hb_002768_030--Hb_000127_180 Hb_000996_140 Hb_000996_140 Hb_002768_030--Hb_000996_140 Hb_000035_370 Hb_000035_370 Hb_002768_030--Hb_000035_370 Hb_006831_130 Hb_006831_130 Hb_002768_030--Hb_006831_130 Hb_003641_020 Hb_003641_020 Hb_012368_020--Hb_003641_020 Hb_012368_020--Hb_005511_160 Hb_001314_100 Hb_001314_100 Hb_012368_020--Hb_001314_100 Hb_000062_650 Hb_000062_650 Hb_012368_020--Hb_000062_650 Hb_134949_020 Hb_134949_020 Hb_012368_020--Hb_134949_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.8969 30.7093 41.9541 26.7316 29.427 41.8756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.5973 184.267 67.2321 20.5588 31.2766

CAGE analysis