Hb_001780_040

Information

Type -
Description -
Location Contig1780: 17951-19807
Sequence    

Annotation

kegg
ID rcu:RCOM_0731400
description mitochondrial import inner membrane translocase subunit tim10, putative
nr
ID XP_012068534.1
description PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
swissprot
ID Q9ZW33
description Mitochondrial import inner membrane translocase subunit TIM10 OS=Arabidopsis thaliana GN=TIM10 PE=1 SV=1
trembl
ID A0A067LGV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08550 PE=4 SV=1
Gene Ontology
ID GO:0045039
description mitochondrial import inner membrane translocase subunit tim10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17108: 17965-19732 , PASA_asmbl_17109: 18886-19505
cDNA
(Sanger)
(ID:Location)		 016_G03r.ab1: 20017-21777 , 017_N06.ab1: 17978-19696

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001780_040 0.0 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
2 Hb_002768_030 0.0568812632 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
3 Hb_003683_110 0.0643427657 - - JHL10I11.3 [Jatropha curcas]
4 Hb_002235_350 0.0645674849 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
5 Hb_000025_620 0.0655524 - - hypothetical protein POPTR_0009s05200g [Populus trichocarpa]
6 Hb_000127_180 0.0671522925 - - 40S ribosomal protein S18, putative [Ricinus communis]
7 Hb_003226_100 0.0717535495 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
8 Hb_001979_040 0.0782392775 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
9 Hb_002259_070 0.0783367282 - - taz protein, putative [Ricinus communis]
10 Hb_000996_140 0.0802039012 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
11 Hb_000920_110 0.0813033572 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
12 Hb_001504_110 0.0823997671 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
13 Hb_001141_140 0.0832851839 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
14 Hb_001300_040 0.0834008988 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
15 Hb_001484_070 0.0848149602 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000906_040 0.084853015 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
17 Hb_007416_030 0.0851254719 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
18 Hb_005511_160 0.0858398403 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
19 Hb_000453_090 0.0859179709 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
20 Hb_002056_050 0.0864397778 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]

Gene co-expression network

sample Hb_001780_040 Hb_001780_040 Hb_002768_030 Hb_002768_030 Hb_001780_040--Hb_002768_030 Hb_003683_110 Hb_003683_110 Hb_001780_040--Hb_003683_110 Hb_002235_350 Hb_002235_350 Hb_001780_040--Hb_002235_350 Hb_000025_620 Hb_000025_620 Hb_001780_040--Hb_000025_620 Hb_000127_180 Hb_000127_180 Hb_001780_040--Hb_000127_180 Hb_003226_100 Hb_003226_100 Hb_001780_040--Hb_003226_100 Hb_002768_030--Hb_003683_110 Hb_002768_030--Hb_000127_180 Hb_000996_140 Hb_000996_140 Hb_002768_030--Hb_000996_140 Hb_000035_370 Hb_000035_370 Hb_002768_030--Hb_000035_370 Hb_006831_130 Hb_006831_130 Hb_002768_030--Hb_006831_130 Hb_012573_070 Hb_012573_070 Hb_003683_110--Hb_012573_070 Hb_000453_090 Hb_000453_090 Hb_003683_110--Hb_000453_090 Hb_003683_110--Hb_003226_100 Hb_007416_030 Hb_007416_030 Hb_003683_110--Hb_007416_030 Hb_003540_240 Hb_003540_240 Hb_002235_350--Hb_003540_240 Hb_000574_160 Hb_000574_160 Hb_002235_350--Hb_000574_160 Hb_000906_040 Hb_000906_040 Hb_002235_350--Hb_000906_040 Hb_001979_040 Hb_001979_040 Hb_002235_350--Hb_001979_040 Hb_001484_070 Hb_001484_070 Hb_002235_350--Hb_001484_070 Hb_001504_110 Hb_001504_110 Hb_000025_620--Hb_001504_110 Hb_000025_620--Hb_003226_100 Hb_003018_010 Hb_003018_010 Hb_000025_620--Hb_003018_010 Hb_000025_620--Hb_000127_180 Hb_002056_050 Hb_002056_050 Hb_000025_620--Hb_002056_050 Hb_002518_080 Hb_002518_080 Hb_000127_180--Hb_002518_080 Hb_000127_180--Hb_001504_110 Hb_001832_060 Hb_001832_060 Hb_000127_180--Hb_001832_060 Hb_000920_110 Hb_000920_110 Hb_003226_100--Hb_000920_110 Hb_004157_030 Hb_004157_030 Hb_003226_100--Hb_004157_030 Hb_003018_020 Hb_003018_020 Hb_003226_100--Hb_003018_020 Hb_003226_100--Hb_002056_050 Hb_001616_040 Hb_001616_040 Hb_003226_100--Hb_001616_040 Hb_143496_010 Hb_143496_010 Hb_003226_100--Hb_143496_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
93.3892 35.0503 74.6389 42.4439 58.1559 71.2265
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
142.352 271.352 94.8334 57.2075 60.0426

CAGE analysis