Hb_002056_050

Information

Type -
Description -
Location Contig2056: 68407-70769
Sequence    

Annotation

kegg
ID pop:POPTR_0008s03710g
description POPTRDRAFT_1084263; hypothetical protein
nr
ID XP_011031705.1
description PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HLJ0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s03710g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21201: 68510-69053 , PASA_asmbl_21202: 70394-70571
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002056_050 0.0 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
2 Hb_000920_110 0.0524385411 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
3 Hb_010068_020 0.0579849863 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
4 Hb_003226_100 0.0599899925 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
5 Hb_003540_240 0.062274334 - - PREDICTED: ribosomal RNA-processing protein 17 [Jatropha curcas]
6 Hb_000172_320 0.0663231561 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
7 Hb_001484_070 0.067663663 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002798_020 0.0681480908 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
9 Hb_000059_370 0.068660943 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
10 Hb_000836_470 0.0715164167 - - -
11 Hb_000479_090 0.0720268704 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
12 Hb_000169_040 0.0730168284 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
13 Hb_000025_620 0.0732978828 - - hypothetical protein POPTR_0009s05200g [Populus trichocarpa]
14 Hb_000384_100 0.0736075004 - - hydrolase, putative [Ricinus communis]
15 Hb_000656_240 0.0751835057 - - proteasome subunit alpha type, putative [Ricinus communis]
16 Hb_004767_080 0.0762720141 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
17 Hb_000329_200 0.0774270087 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
18 Hb_003018_010 0.0785615184 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
19 Hb_001504_110 0.0788146509 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
20 Hb_004143_150 0.0810768247 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]

Gene co-expression network

sample Hb_002056_050 Hb_002056_050 Hb_000920_110 Hb_000920_110 Hb_002056_050--Hb_000920_110 Hb_010068_020 Hb_010068_020 Hb_002056_050--Hb_010068_020 Hb_003226_100 Hb_003226_100 Hb_002056_050--Hb_003226_100 Hb_003540_240 Hb_003540_240 Hb_002056_050--Hb_003540_240 Hb_000172_320 Hb_000172_320 Hb_002056_050--Hb_000172_320 Hb_001484_070 Hb_001484_070 Hb_002056_050--Hb_001484_070 Hb_000920_110--Hb_003226_100 Hb_000920_110--Hb_001484_070 Hb_010175_040 Hb_010175_040 Hb_000920_110--Hb_010175_040 Hb_000479_090 Hb_000479_090 Hb_000920_110--Hb_000479_090 Hb_001616_040 Hb_001616_040 Hb_000920_110--Hb_001616_040 Hb_004375_100 Hb_004375_100 Hb_010068_020--Hb_004375_100 Hb_000384_100 Hb_000384_100 Hb_010068_020--Hb_000384_100 Hb_002043_130 Hb_002043_130 Hb_010068_020--Hb_002043_130 Hb_004216_050 Hb_004216_050 Hb_010068_020--Hb_004216_050 Hb_004157_030 Hb_004157_030 Hb_010068_020--Hb_004157_030 Hb_003226_100--Hb_004157_030 Hb_003018_020 Hb_003018_020 Hb_003226_100--Hb_003018_020 Hb_003226_100--Hb_001616_040 Hb_143496_010 Hb_143496_010 Hb_003226_100--Hb_143496_010 Hb_000441_110 Hb_000441_110 Hb_003540_240--Hb_000441_110 Hb_002235_350 Hb_002235_350 Hb_003540_240--Hb_002235_350 Hb_004127_020 Hb_004127_020 Hb_003540_240--Hb_004127_020 Hb_000169_040 Hb_000169_040 Hb_003540_240--Hb_000169_040 Hb_002798_020 Hb_002798_020 Hb_003540_240--Hb_002798_020 Hb_000172_320--Hb_002043_130 Hb_000172_320--Hb_000920_110 Hb_002078_140 Hb_002078_140 Hb_000172_320--Hb_002078_140 Hb_011671_100 Hb_011671_100 Hb_000172_320--Hb_011671_100 Hb_015279_010 Hb_015279_010 Hb_000172_320--Hb_015279_010 Hb_000453_120 Hb_000453_120 Hb_001484_070--Hb_000453_120 Hb_000261_140 Hb_000261_140 Hb_001484_070--Hb_000261_140 Hb_001979_040 Hb_001979_040 Hb_001484_070--Hb_001979_040 Hb_001085_120 Hb_001085_120 Hb_001484_070--Hb_001085_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.05425 1.11569 2.06508 1.72248 2.18697 2.09721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.34278 6.5134 2.67293 2.40994 1.93855

CAGE analysis