Hb_000172_320

Information

Type -
Description -
Location Contig172: 380905-387763
Sequence    

Annotation

kegg
ID rcu:RCOM_0985520
description hypothetical protein
nr
ID XP_012075177.1
description PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
swissprot
ID Q5HZH2
description Ribosome biogenesis protein TSR3 homolog OS=Mus musculus GN=Tsr3 PE=2 SV=1
trembl
ID B9SSM1
description Probable ribosome biogenesis protein RCOM_0985520 OS=Ricinus communis GN=RCOM_0985520 PE=3 SV=1
Gene Ontology
ID GO:0044424
description ribosome biogenesis protein tsr3 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16145: 383115-383539 , PASA_asmbl_16146: 381053-386811 , PASA_asmbl_16147: 388709-394300
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_320 0.0 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
2 Hb_002056_050 0.0663231561 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
3 Hb_002043_130 0.06703282 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
4 Hb_000920_110 0.0679289713 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
5 Hb_002078_140 0.0681854856 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
6 Hb_011671_100 0.0705251506 - - 60S ribosomal protein L15 [Populus trichocarpa]
7 Hb_015279_010 0.0710493302 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
8 Hb_003435_020 0.0721645502 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_009793_010 0.0749826416 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
10 Hb_000479_090 0.0771541728 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
11 Hb_010068_020 0.0781985153 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
12 Hb_002226_070 0.0782196421 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
13 Hb_003226_100 0.0784494396 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
14 Hb_004157_030 0.0785036138 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
15 Hb_000656_170 0.0794338552 - - lsm1, putative [Ricinus communis]
16 Hb_004032_010 0.0795157073 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
17 Hb_004102_110 0.0805210859 - - Monothiol glutaredoxin-4, putative [Ricinus communis]
18 Hb_005045_060 0.0810103486 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
19 Hb_001814_050 0.0816239854 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_001863_430 0.0816726497 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]

Gene co-expression network

sample Hb_000172_320 Hb_000172_320 Hb_002056_050 Hb_002056_050 Hb_000172_320--Hb_002056_050 Hb_002043_130 Hb_002043_130 Hb_000172_320--Hb_002043_130 Hb_000920_110 Hb_000920_110 Hb_000172_320--Hb_000920_110 Hb_002078_140 Hb_002078_140 Hb_000172_320--Hb_002078_140 Hb_011671_100 Hb_011671_100 Hb_000172_320--Hb_011671_100 Hb_015279_010 Hb_015279_010 Hb_000172_320--Hb_015279_010 Hb_002056_050--Hb_000920_110 Hb_010068_020 Hb_010068_020 Hb_002056_050--Hb_010068_020 Hb_003226_100 Hb_003226_100 Hb_002056_050--Hb_003226_100 Hb_003540_240 Hb_003540_240 Hb_002056_050--Hb_003540_240 Hb_001484_070 Hb_001484_070 Hb_002056_050--Hb_001484_070 Hb_001814_050 Hb_001814_050 Hb_002043_130--Hb_001814_050 Hb_002043_130--Hb_010068_020 Hb_009793_010 Hb_009793_010 Hb_002043_130--Hb_009793_010 Hb_004375_100 Hb_004375_100 Hb_002043_130--Hb_004375_100 Hb_011150_010 Hb_011150_010 Hb_002043_130--Hb_011150_010 Hb_000920_110--Hb_003226_100 Hb_000920_110--Hb_001484_070 Hb_010175_040 Hb_010175_040 Hb_000920_110--Hb_010175_040 Hb_000479_090 Hb_000479_090 Hb_000920_110--Hb_000479_090 Hb_001616_040 Hb_001616_040 Hb_000920_110--Hb_001616_040 Hb_124953_020 Hb_124953_020 Hb_002078_140--Hb_124953_020 Hb_001691_140 Hb_001691_140 Hb_002078_140--Hb_001691_140 Hb_001341_150 Hb_001341_150 Hb_002078_140--Hb_001341_150 Hb_000136_260 Hb_000136_260 Hb_002078_140--Hb_000136_260 Hb_001016_150 Hb_001016_150 Hb_002078_140--Hb_001016_150 Hb_001863_430 Hb_001863_430 Hb_002078_140--Hb_001863_430 Hb_011671_100--Hb_001691_140 Hb_003787_010 Hb_003787_010 Hb_011671_100--Hb_003787_010 Hb_011671_100--Hb_015279_010 Hb_004767_080 Hb_004767_080 Hb_011671_100--Hb_004767_080 Hb_000417_360 Hb_000417_360 Hb_011671_100--Hb_000417_360 Hb_022425_040 Hb_022425_040 Hb_015279_010--Hb_022425_040 Hb_015279_010--Hb_003787_010 Hb_000667_070 Hb_000667_070 Hb_015279_010--Hb_000667_070 Hb_004116_190 Hb_004116_190 Hb_015279_010--Hb_004116_190 Hb_015279_010--Hb_000920_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.36444 5.18819 6.7121 8.17899 8.34102 10.0126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6501 24.2028 8.84838 8.49669 5.04768

CAGE analysis