Hb_000667_070

Information

Type -
Description -
Location Contig667: 158053-160550
Sequence    

Annotation

kegg
ID brp:103864746
description calmodulin-7-like
nr
ID XP_003632230.1
description PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
swissprot
ID P62201
description Calmodulin OS=Lilium longiflorum PE=2 SV=2
trembl
ID B5B036
description TCH OS=Ipomoea batatas PE=2 SV=1
Gene Ontology
ID GO:0005829
description calmodulin-7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53282: 158072-160444 , PASA_asmbl_53283: 159671-159875
cDNA
(Sanger)
(ID:Location)		 004_F05.ab1: 158176-160440 , 004_P09.ab1: 158191-160444 , 006_N09.ab1: 158218-160444 , 007_G22.ab1: 158156-160448 , 021_K06.ab1: 158185-160444 , 027_L13.ab1: 158228-160444 , 041_H11.ab1: 158215-160448 , 051_K11.ab1: 158201-160405

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000667_070 0.0 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
2 Hb_001245_100 0.0556730322 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
3 Hb_001123_130 0.0595234189 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
4 Hb_000656_240 0.065205506 - - proteasome subunit alpha type, putative [Ricinus communis]
5 Hb_015279_010 0.0671264189 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
6 Hb_001133_120 0.0713796643 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
7 Hb_008554_060 0.0725968705 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
8 Hb_000373_070 0.0745861946 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
9 Hb_004116_190 0.0759582353 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
10 Hb_000527_060 0.0760618163 - - Protein C20orf11, putative [Ricinus communis]
11 Hb_005846_040 0.0763067428 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
12 Hb_003052_190 0.0775533288 - - PREDICTED: uncharacterized protein LOC105641937 isoform X2 [Jatropha curcas]
13 Hb_058999_020 0.0780935755 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
14 Hb_000465_460 0.0791055502 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
15 Hb_003151_040 0.0793729084 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
16 Hb_003125_200 0.0799610146 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
17 Hb_001195_480 0.0801238208 - - cop9 complex subunit, putative [Ricinus communis]
18 Hb_029388_020 0.080348577 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012286_030 0.080488987 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
20 Hb_000152_500 0.0808270695 - - PREDICTED: probable mitochondrial intermediate peptidase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000667_070 Hb_000667_070 Hb_001245_100 Hb_001245_100 Hb_000667_070--Hb_001245_100 Hb_001123_130 Hb_001123_130 Hb_000667_070--Hb_001123_130 Hb_000656_240 Hb_000656_240 Hb_000667_070--Hb_000656_240 Hb_015279_010 Hb_015279_010 Hb_000667_070--Hb_015279_010 Hb_001133_120 Hb_001133_120 Hb_000667_070--Hb_001133_120 Hb_008554_060 Hb_008554_060 Hb_000667_070--Hb_008554_060 Hb_001766_060 Hb_001766_060 Hb_001245_100--Hb_001766_060 Hb_005846_040 Hb_005846_040 Hb_001245_100--Hb_005846_040 Hb_027380_050 Hb_027380_050 Hb_001245_100--Hb_027380_050 Hb_003151_040 Hb_003151_040 Hb_001245_100--Hb_003151_040 Hb_002046_180 Hb_002046_180 Hb_001245_100--Hb_002046_180 Hb_000527_060 Hb_000527_060 Hb_001123_130--Hb_000527_060 Hb_000261_140 Hb_000261_140 Hb_001123_130--Hb_000261_140 Hb_002995_020 Hb_002995_020 Hb_001123_130--Hb_002995_020 Hb_001123_130--Hb_000656_240 Hb_001484_070 Hb_001484_070 Hb_001123_130--Hb_001484_070 Hb_004116_190 Hb_004116_190 Hb_000656_240--Hb_004116_190 Hb_001504_110 Hb_001504_110 Hb_000656_240--Hb_001504_110 Hb_001195_480 Hb_001195_480 Hb_000656_240--Hb_001195_480 Hb_011512_070 Hb_011512_070 Hb_000656_240--Hb_011512_070 Hb_000580_090 Hb_000580_090 Hb_000656_240--Hb_000580_090 Hb_000656_240--Hb_008554_060 Hb_022425_040 Hb_022425_040 Hb_015279_010--Hb_022425_040 Hb_003787_010 Hb_003787_010 Hb_015279_010--Hb_003787_010 Hb_015279_010--Hb_004116_190 Hb_000920_110 Hb_000920_110 Hb_015279_010--Hb_000920_110 Hb_011671_100 Hb_011671_100 Hb_015279_010--Hb_011671_100 Hb_000039_220 Hb_000039_220 Hb_001133_120--Hb_000039_220 Hb_000215_110 Hb_000215_110 Hb_001133_120--Hb_000215_110 Hb_000152_500 Hb_000152_500 Hb_001133_120--Hb_000152_500 Hb_001599_040 Hb_001599_040 Hb_001133_120--Hb_001599_040 Hb_002303_070 Hb_002303_070 Hb_001133_120--Hb_002303_070 Hb_000589_120 Hb_000589_120 Hb_008554_060--Hb_000589_120 Hb_003064_020 Hb_003064_020 Hb_008554_060--Hb_003064_020 Hb_002078_140 Hb_002078_140 Hb_008554_060--Hb_002078_140 Hb_001534_120 Hb_001534_120 Hb_008554_060--Hb_001534_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
342.681 279.494 355.372 276.821 243.742 354.509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
346.946 709.081 366.868 259.026 183.302

CAGE analysis