Hb_001123_130

Information

Type transcription factor
Description TF Family: C3H
Location Contig1123: 89073-95816
Sequence    

Annotation

kegg
ID rcu:RCOM_1437550
description nucleic acid binding protein, putative
nr
ID XP_002512627.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q9SWF9
description Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1
trembl
ID B9RFV8
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1437550 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein zfn-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03733: 89818-90068 , PASA_asmbl_03734: 90071-97086 , PASA_asmbl_03735: 95470-96922 , PASA_asmbl_03736: 92539-92748 , PASA_asmbl_03738: 91700-91868 , PASA_asmbl_03739: 93027-93162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_130 0.0 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
2 Hb_000527_060 0.0505982766 - - Protein C20orf11, putative [Ricinus communis]
3 Hb_000261_140 0.0529416078 - - -
4 Hb_000667_070 0.0595234189 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
5 Hb_002995_020 0.0641694088 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
6 Hb_000656_240 0.067349225 - - proteasome subunit alpha type, putative [Ricinus communis]
7 Hb_001484_070 0.0681243901 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000920_110 0.0718197206 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
9 Hb_004109_170 0.0726884872 - - PREDICTED: probable ribokinase [Jatropha curcas]
10 Hb_012286_030 0.0728803546 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
11 Hb_004116_190 0.0729935536 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
12 Hb_004143_150 0.0734223261 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
13 Hb_004102_110 0.0738293626 - - Monothiol glutaredoxin-4, putative [Ricinus communis]
14 Hb_015279_010 0.0754585537 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
15 Hb_004453_170 0.0766056947 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
16 Hb_000580_090 0.0769048119 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
17 Hb_000001_060 0.0779657266 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]
18 Hb_001245_100 0.0799973836 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
19 Hb_005846_040 0.081057991 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
20 Hb_000638_250 0.0813072562 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001123_130 Hb_001123_130 Hb_000527_060 Hb_000527_060 Hb_001123_130--Hb_000527_060 Hb_000261_140 Hb_000261_140 Hb_001123_130--Hb_000261_140 Hb_000667_070 Hb_000667_070 Hb_001123_130--Hb_000667_070 Hb_002995_020 Hb_002995_020 Hb_001123_130--Hb_002995_020 Hb_000656_240 Hb_000656_240 Hb_001123_130--Hb_000656_240 Hb_001484_070 Hb_001484_070 Hb_001123_130--Hb_001484_070 Hb_012286_030 Hb_012286_030 Hb_000527_060--Hb_012286_030 Hb_000527_060--Hb_000261_140 Hb_000115_220 Hb_000115_220 Hb_000527_060--Hb_000115_220 Hb_004143_150 Hb_004143_150 Hb_000527_060--Hb_004143_150 Hb_000920_110 Hb_000920_110 Hb_000527_060--Hb_000920_110 Hb_010175_040 Hb_010175_040 Hb_000261_140--Hb_010175_040 Hb_000261_140--Hb_000920_110 Hb_000261_140--Hb_001484_070 Hb_000638_250 Hb_000638_250 Hb_000261_140--Hb_000638_250 Hb_000261_140--Hb_004143_150 Hb_001245_100 Hb_001245_100 Hb_000667_070--Hb_001245_100 Hb_000667_070--Hb_000656_240 Hb_015279_010 Hb_015279_010 Hb_000667_070--Hb_015279_010 Hb_001133_120 Hb_001133_120 Hb_000667_070--Hb_001133_120 Hb_008554_060 Hb_008554_060 Hb_000667_070--Hb_008554_060 Hb_004116_190 Hb_004116_190 Hb_002995_020--Hb_004116_190 Hb_000020_060 Hb_000020_060 Hb_002995_020--Hb_000020_060 Hb_003787_010 Hb_003787_010 Hb_002995_020--Hb_003787_010 Hb_001633_050 Hb_001633_050 Hb_002995_020--Hb_001633_050 Hb_002995_020--Hb_000656_240 Hb_000656_240--Hb_004116_190 Hb_001504_110 Hb_001504_110 Hb_000656_240--Hb_001504_110 Hb_001195_480 Hb_001195_480 Hb_000656_240--Hb_001195_480 Hb_011512_070 Hb_011512_070 Hb_000656_240--Hb_011512_070 Hb_000580_090 Hb_000580_090 Hb_000656_240--Hb_000580_090 Hb_000656_240--Hb_008554_060 Hb_001484_070--Hb_000920_110 Hb_000453_120 Hb_000453_120 Hb_001484_070--Hb_000453_120 Hb_001979_040 Hb_001979_040 Hb_001484_070--Hb_001979_040 Hb_001085_120 Hb_001085_120 Hb_001484_070--Hb_001085_120 Hb_002056_050 Hb_002056_050 Hb_001484_070--Hb_002056_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.94886 7.07208 11.3426 9.09312 7.80574 10.3673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9903 24.0027 14.9838 7.23324 5.15209

CAGE analysis