Hb_008554_060

Information

Type -
Description -
Location Contig8554: 37856-41967
Sequence    

Annotation

kegg
ID pop:POPTR_0015s04220g
description POPTRDRAFT_574967; hypothetical protein
nr
ID XP_012072552.1
description PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
swissprot
ID Q949S9
description Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana GN=MOS4 PE=1 SV=1
trembl
ID A0A067KSC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05347 PE=4 SV=1
Gene Ontology
ID GO:0006397
description pre-mrna-splicing factor spf27 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60540: 37957-41999 , PASA_asmbl_60541: 39748-39981
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008554_060 0.0 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
2 Hb_000589_120 0.0609386308 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
3 Hb_003064_020 0.0617062224 - - hypothetical protein JCGZ_21649 [Jatropha curcas]
4 Hb_000656_240 0.0640834396 - - proteasome subunit alpha type, putative [Ricinus communis]
5 Hb_002078_140 0.0725297179 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
6 Hb_000667_070 0.0725968705 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
7 Hb_001534_120 0.0741720373 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
8 Hb_002534_150 0.0749902866 - - catalytic, putative [Ricinus communis]
9 Hb_014109_040 0.076323782 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
10 Hb_001195_480 0.0764041116 - - cop9 complex subunit, putative [Ricinus communis]
11 Hb_005697_060 0.0773159431 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
12 Hb_003942_020 0.0784264582 - - PREDICTED: multiple RNA-binding domain-containing protein 1 isoform X1 [Jatropha curcas]
13 Hb_000684_380 0.0789403964 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
14 Hb_004058_030 0.0795045102 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
15 Hb_011512_070 0.0800359331 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
16 Hb_000431_170 0.0814042198 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
17 Hb_004116_060 0.081671785 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
18 Hb_002226_060 0.0832340107 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
19 Hb_001691_140 0.0836689419 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
20 Hb_001133_120 0.0837154289 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]

Gene co-expression network

sample Hb_008554_060 Hb_008554_060 Hb_000589_120 Hb_000589_120 Hb_008554_060--Hb_000589_120 Hb_003064_020 Hb_003064_020 Hb_008554_060--Hb_003064_020 Hb_000656_240 Hb_000656_240 Hb_008554_060--Hb_000656_240 Hb_002078_140 Hb_002078_140 Hb_008554_060--Hb_002078_140 Hb_000667_070 Hb_000667_070 Hb_008554_060--Hb_000667_070 Hb_001534_120 Hb_001534_120 Hb_008554_060--Hb_001534_120 Hb_000684_380 Hb_000684_380 Hb_000589_120--Hb_000684_380 Hb_014109_040 Hb_014109_040 Hb_000589_120--Hb_014109_040 Hb_007576_080 Hb_007576_080 Hb_000589_120--Hb_007576_080 Hb_000417_130 Hb_000417_130 Hb_000589_120--Hb_000417_130 Hb_000905_110 Hb_000905_110 Hb_000589_120--Hb_000905_110 Hb_011512_070 Hb_011512_070 Hb_003064_020--Hb_011512_070 Hb_002226_060 Hb_002226_060 Hb_003064_020--Hb_002226_060 Hb_003052_190 Hb_003052_190 Hb_003064_020--Hb_003052_190 Hb_003064_020--Hb_000589_120 Hb_003942_020 Hb_003942_020 Hb_003064_020--Hb_003942_020 Hb_004116_190 Hb_004116_190 Hb_000656_240--Hb_004116_190 Hb_001504_110 Hb_001504_110 Hb_000656_240--Hb_001504_110 Hb_001195_480 Hb_001195_480 Hb_000656_240--Hb_001195_480 Hb_000656_240--Hb_011512_070 Hb_000580_090 Hb_000580_090 Hb_000656_240--Hb_000580_090 Hb_124953_020 Hb_124953_020 Hb_002078_140--Hb_124953_020 Hb_001691_140 Hb_001691_140 Hb_002078_140--Hb_001691_140 Hb_001341_150 Hb_001341_150 Hb_002078_140--Hb_001341_150 Hb_000136_260 Hb_000136_260 Hb_002078_140--Hb_000136_260 Hb_001016_150 Hb_001016_150 Hb_002078_140--Hb_001016_150 Hb_001863_430 Hb_001863_430 Hb_002078_140--Hb_001863_430 Hb_001245_100 Hb_001245_100 Hb_000667_070--Hb_001245_100 Hb_001123_130 Hb_001123_130 Hb_000667_070--Hb_001123_130 Hb_000667_070--Hb_000656_240 Hb_015279_010 Hb_015279_010 Hb_000667_070--Hb_015279_010 Hb_001133_120 Hb_001133_120 Hb_000667_070--Hb_001133_120 Hb_001534_120--Hb_001195_480 Hb_007477_070 Hb_007477_070 Hb_001534_120--Hb_007477_070 Hb_010921_010 Hb_010921_010 Hb_001534_120--Hb_010921_010 Hb_002534_150 Hb_002534_150 Hb_001534_120--Hb_002534_150 Hb_001512_060 Hb_001512_060 Hb_001534_120--Hb_001512_060 Hb_000362_200 Hb_000362_200 Hb_001534_120--Hb_000362_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.269 14.2654 25.8531 17.1018 21.7073 20.707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.6989 46.7781 19.192 22.7048 15.408

CAGE analysis