Hb_002534_150

Information

Type -
Description -
Location Contig2534: 90386-92901
Sequence    

Annotation

kegg
ID rcu:RCOM_1472280
description catalytic, putative
nr
ID XP_002514760.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q6DBG8
description Probable arabinosyltransferase ARAD1 OS=Arabidopsis thaliana GN=ARAD1 PE=1 SV=1
trembl
ID B9RLZ1
description Catalytic, putative OS=Ricinus communis GN=RCOM_1472280 PE=4 SV=1
Gene Ontology
ID GO:0016740
description probable arabinosyltransferase arad1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26499: 90653-92273 , PASA_asmbl_26500: 92357-92505 , PASA_asmbl_26502: 93361-93833 , PASA_asmbl_26503: 93599-93833
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002534_150 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_001828_060 0.0546586724 desease resistance Gene Name: AAA_31 nucleotide-binding protein, putative [Ricinus communis]
3 Hb_005725_250 0.0626819414 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
4 Hb_001534_120 0.063859685 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
5 Hb_000059_370 0.0649593367 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
6 Hb_005697_060 0.0684305249 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
7 Hb_004116_190 0.0685727634 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
8 Hb_000656_240 0.0707818701 - - proteasome subunit alpha type, putative [Ricinus communis]
9 Hb_001140_370 0.0739254387 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
10 Hb_003428_030 0.0744823937 - - tRNA, putative [Ricinus communis]
11 Hb_008554_060 0.0749902866 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
12 Hb_006693_020 0.0764060262 - - PREDICTED: frataxin, mitochondrial [Gossypium raimondii]
13 Hb_007163_070 0.0771676199 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
14 Hb_001633_050 0.0773333585 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
15 Hb_001105_030 0.0781886094 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
16 Hb_024071_020 0.0785705601 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
17 Hb_001195_480 0.0787371561 - - cop9 complex subunit, putative [Ricinus communis]
18 Hb_003780_030 0.0788546056 - - PREDICTED: protein CMSS1 [Jatropha curcas]
19 Hb_000217_030 0.0790974371 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
20 Hb_000529_030 0.0792794079 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002534_150 Hb_002534_150 Hb_001828_060 Hb_001828_060 Hb_002534_150--Hb_001828_060 Hb_005725_250 Hb_005725_250 Hb_002534_150--Hb_005725_250 Hb_001534_120 Hb_001534_120 Hb_002534_150--Hb_001534_120 Hb_000059_370 Hb_000059_370 Hb_002534_150--Hb_000059_370 Hb_005697_060 Hb_005697_060 Hb_002534_150--Hb_005697_060 Hb_004116_190 Hb_004116_190 Hb_002534_150--Hb_004116_190 Hb_001828_060--Hb_005725_250 Hb_001828_060--Hb_000059_370 Hb_027380_050 Hb_027380_050 Hb_001828_060--Hb_027380_050 Hb_003780_030 Hb_003780_030 Hb_001828_060--Hb_003780_030 Hb_012490_070 Hb_012490_070 Hb_001828_060--Hb_012490_070 Hb_000676_180 Hb_000676_180 Hb_005725_250--Hb_000676_180 Hb_002739_100 Hb_002739_100 Hb_005725_250--Hb_002739_100 Hb_012019_010 Hb_012019_010 Hb_005725_250--Hb_012019_010 Hb_005779_060 Hb_005779_060 Hb_005725_250--Hb_005779_060 Hb_001195_480 Hb_001195_480 Hb_001534_120--Hb_001195_480 Hb_007477_070 Hb_007477_070 Hb_001534_120--Hb_007477_070 Hb_010921_010 Hb_010921_010 Hb_001534_120--Hb_010921_010 Hb_001512_060 Hb_001512_060 Hb_001534_120--Hb_001512_060 Hb_000362_200 Hb_000362_200 Hb_001534_120--Hb_000362_200 Hb_001105_030 Hb_001105_030 Hb_000059_370--Hb_001105_030 Hb_000479_090 Hb_000479_090 Hb_000059_370--Hb_000479_090 Hb_002226_070 Hb_002226_070 Hb_000059_370--Hb_002226_070 Hb_000384_100 Hb_000384_100 Hb_000059_370--Hb_000384_100 Hb_001821_010 Hb_001821_010 Hb_000059_370--Hb_001821_010 Hb_007163_070 Hb_007163_070 Hb_005697_060--Hb_007163_070 Hb_006120_070 Hb_006120_070 Hb_005697_060--Hb_006120_070 Hb_028227_020 Hb_028227_020 Hb_005697_060--Hb_028227_020 Hb_000465_090 Hb_000465_090 Hb_005697_060--Hb_000465_090 Hb_001662_150 Hb_001662_150 Hb_005697_060--Hb_001662_150 Hb_005697_060--Hb_001534_120 Hb_001633_050 Hb_001633_050 Hb_004116_190--Hb_001633_050 Hb_002995_020 Hb_002995_020 Hb_004116_190--Hb_002995_020 Hb_000656_240 Hb_000656_240 Hb_004116_190--Hb_000656_240 Hb_000020_060 Hb_000020_060 Hb_004116_190--Hb_000020_060 Hb_004116_190--Hb_000676_180 Hb_005846_040 Hb_005846_040 Hb_004116_190--Hb_005846_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.22207 4.0443 5.37978 4.9334 7.86981 5.18133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.03813 12.5308 5.73286 5.56739 4.49774

CAGE analysis