Hb_000676_180

Information

Type -
Description -
Location Contig676: 123656-127716
Sequence    

Annotation

kegg
ID tcc:TCM_000290
description Ubiquitin-conjugating enzyme 16
nr
ID XP_007046806.1
description Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
swissprot
ID Q9FWT2
description Probable ubiquitin-conjugating enzyme E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1
trembl
ID A0A061DLV4
description Ubiquitin-conjugating enzyme 16 OS=Theobroma cacao GN=TCM_000290 PE=3 SV=1
Gene Ontology
ID GO:0016874
description probable ubiquitin-conjugating enzyme e2 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53565: 123609-127891 , PASA_asmbl_53566: 124036-127128 , PASA_asmbl_53567: 125319-125594 , PASA_asmbl_53569: 126625-126923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_180 0.0 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
2 Hb_004116_190 0.0521914786 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
3 Hb_000479_090 0.0662931643 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
4 Hb_005725_250 0.0666929498 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
5 Hb_012286_030 0.0685603913 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
6 Hb_005846_040 0.0695499446 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
7 Hb_004635_100 0.0706475492 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
8 Hb_001633_050 0.0706858121 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
9 Hb_000876_070 0.0710736432 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
10 Hb_027380_050 0.0717426712 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Jatropha curcas]
11 Hb_000059_370 0.0722564268 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
12 Hb_002739_100 0.0726930764 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
13 Hb_008221_140 0.0735538446 - - PREDICTED: uncharacterized protein LOC105644226 [Jatropha curcas]
14 Hb_012019_010 0.0741797923 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
15 Hb_000703_350 0.0753006641 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
16 Hb_004109_170 0.0754724289 - - PREDICTED: probable ribokinase [Jatropha curcas]
17 Hb_005779_060 0.0755658197 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
18 Hb_004143_150 0.075902012 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
19 Hb_001245_100 0.0766110879 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
20 Hb_000614_160 0.0772062105 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000676_180 Hb_000676_180 Hb_004116_190 Hb_004116_190 Hb_000676_180--Hb_004116_190 Hb_000479_090 Hb_000479_090 Hb_000676_180--Hb_000479_090 Hb_005725_250 Hb_005725_250 Hb_000676_180--Hb_005725_250 Hb_012286_030 Hb_012286_030 Hb_000676_180--Hb_012286_030 Hb_005846_040 Hb_005846_040 Hb_000676_180--Hb_005846_040 Hb_004635_100 Hb_004635_100 Hb_000676_180--Hb_004635_100 Hb_001633_050 Hb_001633_050 Hb_004116_190--Hb_001633_050 Hb_002995_020 Hb_002995_020 Hb_004116_190--Hb_002995_020 Hb_000656_240 Hb_000656_240 Hb_004116_190--Hb_000656_240 Hb_000020_060 Hb_000020_060 Hb_004116_190--Hb_000020_060 Hb_004116_190--Hb_005846_040 Hb_000384_100 Hb_000384_100 Hb_000479_090--Hb_000384_100 Hb_000059_370 Hb_000059_370 Hb_000479_090--Hb_000059_370 Hb_000920_110 Hb_000920_110 Hb_000479_090--Hb_000920_110 Hb_004127_020 Hb_004127_020 Hb_000479_090--Hb_004127_020 Hb_002686_020 Hb_002686_020 Hb_000479_090--Hb_002686_020 Hb_001828_060 Hb_001828_060 Hb_005725_250--Hb_001828_060 Hb_002534_150 Hb_002534_150 Hb_005725_250--Hb_002534_150 Hb_002739_100 Hb_002739_100 Hb_005725_250--Hb_002739_100 Hb_012019_010 Hb_012019_010 Hb_005725_250--Hb_012019_010 Hb_005779_060 Hb_005779_060 Hb_005725_250--Hb_005779_060 Hb_000527_060 Hb_000527_060 Hb_012286_030--Hb_000527_060 Hb_000580_090 Hb_000580_090 Hb_012286_030--Hb_000580_090 Hb_004109_170 Hb_004109_170 Hb_012286_030--Hb_004109_170 Hb_012286_030--Hb_004116_190 Hb_012286_030--Hb_005846_040 Hb_003151_040 Hb_003151_040 Hb_005846_040--Hb_003151_040 Hb_000373_070 Hb_000373_070 Hb_005846_040--Hb_000373_070 Hb_000030_030 Hb_000030_030 Hb_005846_040--Hb_000030_030 Hb_001245_100 Hb_001245_100 Hb_005846_040--Hb_001245_100 Hb_003787_010 Hb_003787_010 Hb_005846_040--Hb_003787_010 Hb_000240_090 Hb_000240_090 Hb_004635_100--Hb_000240_090 Hb_001059_030 Hb_001059_030 Hb_004635_100--Hb_001059_030 Hb_000915_090 Hb_000915_090 Hb_004635_100--Hb_000915_090 Hb_029879_130 Hb_029879_130 Hb_004635_100--Hb_029879_130 Hb_000120_680 Hb_000120_680 Hb_004635_100--Hb_000120_680
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.4065 30.7325 29.79 31.3991 40.3509 33.5394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.6494 88.0972 59.862 28.1428 31.3093

CAGE analysis