Hb_003151_040

Information

Type transcription factor
Description TF Family: Alfin-like
Location Contig3151: 49778-56938
Sequence    

Annotation

kegg
ID pop:POPTR_0003s04070g
description POPTRDRAFT_830643; zinc finger family protein
nr
ID XP_002303216.1
description zinc finger family protein [Populus trichocarpa]
swissprot
ID Q40359
description PHD finger protein Alfin1 OS=Medicago sativa GN=ALFIN-1 PE=1 SV=1
trembl
ID B9GVE0
description Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0003s04070g PE=4 SV=1
Gene Ontology
ID GO:0005524
description phd finger protein alfin1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33240: 49450-56842
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003151_040 0.0 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
2 Hb_005846_040 0.0433049201 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
3 Hb_001766_060 0.0478600409 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000373_070 0.0507908646 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
5 Hb_006059_050 0.0531502052 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
6 Hb_000152_500 0.0539954152 - - PREDICTED: probable mitochondrial intermediate peptidase, mitochondrial [Jatropha curcas]
7 Hb_000001_060 0.0551350671 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]
8 Hb_001245_100 0.0619636458 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
9 Hb_000030_030 0.0625255357 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
10 Hb_004899_370 0.0639702673 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
11 Hb_008013_050 0.0662969408 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
12 Hb_003502_060 0.0682469221 - - PREDICTED: alpha-1,3/1,6-mannosyltransferase ALG2 [Jatropha curcas]
13 Hb_004143_150 0.069608992 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
14 Hb_004109_170 0.0699317753 - - PREDICTED: probable ribokinase [Jatropha curcas]
15 Hb_172426_040 0.0707016897 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
16 Hb_006615_240 0.070747957 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
17 Hb_003787_010 0.0714800338 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
18 Hb_027380_050 0.0726839952 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Jatropha curcas]
19 Hb_010098_050 0.0728556482 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
20 Hb_008453_030 0.0737118209 - - Thioredoxin superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_003151_040 Hb_003151_040 Hb_005846_040 Hb_005846_040 Hb_003151_040--Hb_005846_040 Hb_001766_060 Hb_001766_060 Hb_003151_040--Hb_001766_060 Hb_000373_070 Hb_000373_070 Hb_003151_040--Hb_000373_070 Hb_006059_050 Hb_006059_050 Hb_003151_040--Hb_006059_050 Hb_000152_500 Hb_000152_500 Hb_003151_040--Hb_000152_500 Hb_000001_060 Hb_000001_060 Hb_003151_040--Hb_000001_060 Hb_005846_040--Hb_000373_070 Hb_000030_030 Hb_000030_030 Hb_005846_040--Hb_000030_030 Hb_001245_100 Hb_001245_100 Hb_005846_040--Hb_001245_100 Hb_003787_010 Hb_003787_010 Hb_005846_040--Hb_003787_010 Hb_004116_190 Hb_004116_190 Hb_005846_040--Hb_004116_190 Hb_001766_060--Hb_001245_100 Hb_001766_060--Hb_005846_040 Hb_001246_110 Hb_001246_110 Hb_001766_060--Hb_001246_110 Hb_027380_050 Hb_027380_050 Hb_001766_060--Hb_027380_050 Hb_012019_010 Hb_012019_010 Hb_001766_060--Hb_012019_010 Hb_000215_110 Hb_000215_110 Hb_000373_070--Hb_000215_110 Hb_001163_050 Hb_001163_050 Hb_000373_070--Hb_001163_050 Hb_000331_550 Hb_000331_550 Hb_000373_070--Hb_000331_550 Hb_002078_350 Hb_002078_350 Hb_000373_070--Hb_002078_350 Hb_008013_050 Hb_008013_050 Hb_006059_050--Hb_008013_050 Hb_172426_040 Hb_172426_040 Hb_006059_050--Hb_172426_040 Hb_006059_050--Hb_000373_070 Hb_006059_050--Hb_005846_040 Hb_006059_050--Hb_000152_500 Hb_000152_500--Hb_000373_070 Hb_001470_030 Hb_001470_030 Hb_000152_500--Hb_001470_030 Hb_001133_120 Hb_001133_120 Hb_000152_500--Hb_001133_120 Hb_000152_500--Hb_027380_050 Hb_004143_150 Hb_004143_150 Hb_000001_060--Hb_004143_150 Hb_004899_370 Hb_004899_370 Hb_000001_060--Hb_004899_370 Hb_001476_080 Hb_001476_080 Hb_000001_060--Hb_001476_080 Hb_000005_090 Hb_000005_090 Hb_000001_060--Hb_000005_090 Hb_000001_060--Hb_001766_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.6646 36.5604 35.5048 39.1446 25.743 40.2052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.5433 73.4908 47.55 32.7865 31.5165

CAGE analysis