Hb_001246_110

Information

Type -
Description -
Location Contig1246: 65355-67428
Sequence    

Annotation

kegg
ID rcu:RCOM_0658850
description ATPUP11, putative
nr
ID XP_012083761.1
description PREDICTED: probable purine permease 11 [Jatropha curcas]
swissprot
ID Q9LPF6
description Probable purine permease 11 OS=Arabidopsis thaliana GN=PUP11 PE=1 SV=1
trembl
ID A0A067K9E7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14681 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable purine permease 11 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07438: 65369-67362 , PASA_asmbl_07439: 65509-67293
cDNA
(Sanger)
(ID:Location)		 048_N02.ab1: 65369-66691

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001246_110 0.0 - - PREDICTED: probable purine permease 11 [Jatropha curcas]
2 Hb_000164_020 0.068446108 - - actin binding protein, putative [Ricinus communis]
3 Hb_001766_060 0.0689954879 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000729_030 0.0860275973 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
5 Hb_000869_080 0.0878231266 - - PREDICTED: uncharacterized protein LOC105641084 isoform X2 [Jatropha curcas]
6 Hb_012019_010 0.0886714599 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
7 Hb_000342_060 0.0897638373 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like isoform X1 [Nicotiana sylvestris]
8 Hb_000614_160 0.092793112 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
9 Hb_000221_190 0.0933622207 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
10 Hb_001245_100 0.0942807812 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
11 Hb_003038_240 0.0974799108 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004208_030 0.0979350528 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
13 Hb_006502_060 0.0986816089 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004032_360 0.0990213245 - - PREDICTED: uncharacterized protein LOC103403885 [Malus domestica]
15 Hb_002046_180 0.1019125609 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
16 Hb_002311_360 0.1021772192 - - PREDICTED: uncharacterized protein LOC105114273 [Populus euphratica]
17 Hb_000336_150 0.103375802 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
18 Hb_002754_010 0.1037804966 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
19 Hb_055488_010 0.1042496134 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
20 Hb_139294_010 0.1043269786 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001246_110 Hb_001246_110 Hb_000164_020 Hb_000164_020 Hb_001246_110--Hb_000164_020 Hb_001766_060 Hb_001766_060 Hb_001246_110--Hb_001766_060 Hb_000729_030 Hb_000729_030 Hb_001246_110--Hb_000729_030 Hb_000869_080 Hb_000869_080 Hb_001246_110--Hb_000869_080 Hb_012019_010 Hb_012019_010 Hb_001246_110--Hb_012019_010 Hb_000342_060 Hb_000342_060 Hb_001246_110--Hb_000342_060 Hb_000164_020--Hb_000342_060 Hb_000164_020--Hb_000869_080 Hb_004208_030 Hb_004208_030 Hb_000164_020--Hb_004208_030 Hb_000164_020--Hb_001766_060 Hb_002217_020 Hb_002217_020 Hb_000164_020--Hb_002217_020 Hb_001245_100 Hb_001245_100 Hb_001766_060--Hb_001245_100 Hb_003151_040 Hb_003151_040 Hb_001766_060--Hb_003151_040 Hb_005846_040 Hb_005846_040 Hb_001766_060--Hb_005846_040 Hb_027380_050 Hb_027380_050 Hb_001766_060--Hb_027380_050 Hb_001766_060--Hb_012019_010 Hb_000729_030--Hb_000869_080 Hb_000261_020 Hb_000261_020 Hb_000729_030--Hb_000261_020 Hb_000336_150 Hb_000336_150 Hb_000729_030--Hb_000336_150 Hb_013358_040 Hb_013358_040 Hb_000729_030--Hb_013358_040 Hb_003124_150 Hb_003124_150 Hb_000729_030--Hb_003124_150 Hb_010368_010 Hb_010368_010 Hb_000729_030--Hb_010368_010 Hb_164010_040 Hb_164010_040 Hb_000869_080--Hb_164010_040 Hb_000869_080--Hb_013358_040 Hb_000738_020 Hb_000738_020 Hb_000869_080--Hb_000738_020 Hb_005162_090 Hb_005162_090 Hb_000869_080--Hb_005162_090 Hb_002073_200 Hb_002073_200 Hb_000869_080--Hb_002073_200 Hb_002046_180 Hb_002046_180 Hb_012019_010--Hb_002046_180 Hb_005463_100 Hb_005463_100 Hb_012019_010--Hb_005463_100 Hb_005779_060 Hb_005779_060 Hb_012019_010--Hb_005779_060 Hb_000876_070 Hb_000876_070 Hb_012019_010--Hb_000876_070 Hb_002110_150 Hb_002110_150 Hb_012019_010--Hb_002110_150 Hb_000614_160 Hb_000614_160 Hb_012019_010--Hb_000614_160 Hb_000056_210 Hb_000056_210 Hb_000342_060--Hb_000056_210 Hb_095296_010 Hb_095296_010 Hb_000342_060--Hb_095296_010 Hb_000868_110 Hb_000868_110 Hb_000342_060--Hb_000868_110 Hb_000856_380 Hb_000856_380 Hb_000342_060--Hb_000856_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7368 13.8303 9.0134 11.3582 5.87836 8.15261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4149 20.212 15.4143 5.21287 11.3893

CAGE analysis