Hb_010368_010

Information

Type -
Description -
Location Contig10368: 12225-17193
Sequence    

Annotation

kegg
ID rcu:RCOM_1442120
description RNA splicing protein mrs2, mitochondrial, putative
nr
ID XP_002512736.1
description RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
swissprot
ID Q9SAH0
description Magnesium transporter MRS2-10 OS=Arabidopsis thaliana GN=MRS2-10 PE=2 SV=1
trembl
ID B9RGM7
description RNA splicing protein mrs2, mitochondrial, putative OS=Ricinus communis GN=RCOM_1442120 PE=4 SV=1
Gene Ontology
ID GO:0016020
description magnesium transporter mrs2-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01384: 11870-17183
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010368_010 0.0 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
2 Hb_013358_040 0.0686401706 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
3 Hb_008013_050 0.0718823662 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
4 Hb_000699_030 0.0727057181 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
5 Hb_000729_030 0.0730878612 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
6 Hb_000336_150 0.0747794382 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
7 Hb_000069_380 0.0785390243 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
8 Hb_002686_170 0.0801597589 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
9 Hb_181729_010 0.0803958723 - - PREDICTED: DNA polymerase epsilon subunit 2 isoform X1 [Jatropha curcas]
10 Hb_002232_410 0.0805533053 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
11 Hb_003878_090 0.0806231954 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
12 Hb_007304_120 0.0819675553 - - NAD(P)-binding Rossmann-fold superfamily protein isoform 1 [Theobroma cacao]
13 Hb_019280_050 0.0825015945 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 [Jatropha curcas]
14 Hb_001300_150 0.0826928822 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
15 Hb_000331_550 0.0830274748 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
16 Hb_000708_030 0.0830906684 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
17 Hb_005271_220 0.0834590043 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
18 Hb_003861_060 0.0834866943 - - PREDICTED: treacle protein [Jatropha curcas]
19 Hb_003124_150 0.0835975784 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
20 Hb_005588_080 0.0846687609 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]

Gene co-expression network

sample Hb_010368_010 Hb_010368_010 Hb_013358_040 Hb_013358_040 Hb_010368_010--Hb_013358_040 Hb_008013_050 Hb_008013_050 Hb_010368_010--Hb_008013_050 Hb_000699_030 Hb_000699_030 Hb_010368_010--Hb_000699_030 Hb_000729_030 Hb_000729_030 Hb_010368_010--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_010368_010--Hb_000336_150 Hb_000069_380 Hb_000069_380 Hb_010368_010--Hb_000069_380 Hb_000069_310 Hb_000069_310 Hb_013358_040--Hb_000069_310 Hb_000915_180 Hb_000915_180 Hb_013358_040--Hb_000915_180 Hb_164010_040 Hb_164010_040 Hb_013358_040--Hb_164010_040 Hb_002073_200 Hb_002073_200 Hb_013358_040--Hb_002073_200 Hb_003428_010 Hb_003428_010 Hb_013358_040--Hb_003428_010 Hb_000869_080 Hb_000869_080 Hb_013358_040--Hb_000869_080 Hb_006059_050 Hb_006059_050 Hb_008013_050--Hb_006059_050 Hb_002301_150 Hb_002301_150 Hb_008013_050--Hb_002301_150 Hb_003502_060 Hb_003502_060 Hb_008013_050--Hb_003502_060 Hb_003151_040 Hb_003151_040 Hb_008013_050--Hb_003151_040 Hb_010098_050 Hb_010098_050 Hb_008013_050--Hb_010098_050 Hb_000030_030 Hb_000030_030 Hb_008013_050--Hb_000030_030 Hb_000708_030 Hb_000708_030 Hb_000699_030--Hb_000708_030 Hb_000327_270 Hb_000327_270 Hb_000699_030--Hb_000327_270 Hb_007007_120 Hb_007007_120 Hb_000699_030--Hb_007007_120 Hb_005116_160 Hb_005116_160 Hb_000699_030--Hb_005116_160 Hb_005489_020 Hb_005489_020 Hb_000699_030--Hb_005489_020 Hb_003680_120 Hb_003680_120 Hb_000699_030--Hb_003680_120 Hb_000729_030--Hb_000869_080 Hb_000261_020 Hb_000261_020 Hb_000729_030--Hb_000261_020 Hb_000729_030--Hb_000336_150 Hb_000729_030--Hb_013358_040 Hb_003124_150 Hb_003124_150 Hb_000729_030--Hb_003124_150 Hb_007304_120 Hb_007304_120 Hb_000336_150--Hb_007304_120 Hb_006615_240 Hb_006615_240 Hb_000336_150--Hb_006615_240 Hb_003582_060 Hb_003582_060 Hb_000336_150--Hb_003582_060 Hb_000205_090 Hb_000205_090 Hb_000336_150--Hb_000205_090 Hb_004109_170 Hb_004109_170 Hb_000336_150--Hb_004109_170 Hb_006059_040 Hb_006059_040 Hb_000069_380--Hb_006059_040 Hb_000069_380--Hb_000708_030 Hb_000069_380--Hb_000699_030 Hb_001225_040 Hb_001225_040 Hb_000069_380--Hb_001225_040 Hb_001699_220 Hb_001699_220 Hb_000069_380--Hb_001699_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3707 12.5649 16.4393 12.5529 9.08075 9.53951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.5591 14.8743 16.1273 10.5727 13.2625

CAGE analysis