Hb_000336_150

Information

Type -
Description -
Location Contig336: 220751-223407
Sequence    

Annotation

kegg
ID rcu:RCOM_1677790
description ribulose-5-phosphate-3-epimerase, putative (EC:5.1.3.1)
nr
ID XP_002509539.1
description ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
swissprot
ID Q9SE42
description Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japonica GN=Os09g0505700 PE=1 SV=1
trembl
ID B9RBK5
description Ribulose-phosphate 3-epimerase OS=Ricinus communis GN=RCOM_1677790 PE=3 SV=1
Gene Ontology
ID GO:0004750
description ribulose-phosphate 3- cytoplasmic isoform

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35162: 220828-223406 , PASA_asmbl_35163: 220778-223393
cDNA
(Sanger)
(ID:Location)		 004_J01.ab1: 220828-223191 , 052_M09.ab1: 220828-223148

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000336_150 0.0 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
2 Hb_000729_030 0.055556355 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
3 Hb_007304_120 0.0587114098 - - NAD(P)-binding Rossmann-fold superfamily protein isoform 1 [Theobroma cacao]
4 Hb_006615_240 0.0626819121 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
5 Hb_003582_060 0.0694333387 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
6 Hb_000205_090 0.0698267028 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
7 Hb_004109_170 0.0705704246 - - PREDICTED: probable ribokinase [Jatropha curcas]
8 Hb_000010_190 0.072519278 - - PREDICTED: protein-L-isoaspartate O-methyltransferase 1 isoform X2 [Jatropha curcas]
9 Hb_012286_030 0.0736605017 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
10 Hb_010098_050 0.0737569784 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
11 Hb_003124_150 0.0739041263 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
12 Hb_003151_040 0.0745086702 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
13 Hb_010368_010 0.0747794382 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
14 Hb_005846_040 0.0752869664 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
15 Hb_004324_090 0.0759234487 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
16 Hb_012019_010 0.0785910531 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
17 Hb_000614_160 0.0787249482 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
18 Hb_000221_190 0.0798014672 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
19 Hb_000310_020 0.0798319148 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
20 Hb_001766_060 0.0798515061 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000336_150 Hb_000336_150 Hb_000729_030 Hb_000729_030 Hb_000336_150--Hb_000729_030 Hb_007304_120 Hb_007304_120 Hb_000336_150--Hb_007304_120 Hb_006615_240 Hb_006615_240 Hb_000336_150--Hb_006615_240 Hb_003582_060 Hb_003582_060 Hb_000336_150--Hb_003582_060 Hb_000205_090 Hb_000205_090 Hb_000336_150--Hb_000205_090 Hb_004109_170 Hb_004109_170 Hb_000336_150--Hb_004109_170 Hb_000869_080 Hb_000869_080 Hb_000729_030--Hb_000869_080 Hb_000261_020 Hb_000261_020 Hb_000729_030--Hb_000261_020 Hb_013358_040 Hb_013358_040 Hb_000729_030--Hb_013358_040 Hb_003124_150 Hb_003124_150 Hb_000729_030--Hb_003124_150 Hb_010368_010 Hb_010368_010 Hb_000729_030--Hb_010368_010 Hb_003387_060 Hb_003387_060 Hb_007304_120--Hb_003387_060 Hb_012286_030 Hb_012286_030 Hb_007304_120--Hb_012286_030 Hb_002016_150 Hb_002016_150 Hb_007304_120--Hb_002016_150 Hb_007304_120--Hb_010368_010 Hb_000732_010 Hb_000732_010 Hb_007304_120--Hb_000732_010 Hb_006615_240--Hb_003582_060 Hb_010098_050 Hb_010098_050 Hb_006615_240--Hb_010098_050 Hb_000390_300 Hb_000390_300 Hb_006615_240--Hb_000390_300 Hb_006615_240--Hb_004109_170 Hb_000003_230 Hb_000003_230 Hb_006615_240--Hb_000003_230 Hb_001341_150 Hb_001341_150 Hb_006615_240--Hb_001341_150 Hb_003582_060--Hb_000003_230 Hb_003304_020 Hb_003304_020 Hb_003582_060--Hb_003304_020 Hb_000221_190 Hb_000221_190 Hb_003582_060--Hb_000221_190 Hb_017895_040 Hb_017895_040 Hb_003582_060--Hb_017895_040 Hb_001300_150 Hb_001300_150 Hb_003582_060--Hb_001300_150 Hb_000205_090--Hb_004109_170 Hb_000205_090--Hb_010098_050 Hb_118419_010 Hb_118419_010 Hb_000205_090--Hb_118419_010 Hb_000236_040 Hb_000236_040 Hb_000205_090--Hb_000236_040 Hb_000656_240 Hb_000656_240 Hb_000205_090--Hb_000656_240 Hb_004116_190 Hb_004116_190 Hb_000205_090--Hb_004116_190 Hb_000580_090 Hb_000580_090 Hb_004109_170--Hb_000580_090 Hb_000260_030 Hb_000260_030 Hb_004109_170--Hb_000260_030 Hb_004109_170--Hb_118419_010 Hb_004109_170--Hb_012286_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.0693 26.4088 28.2214 25.2276 23.345 16.7247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.4759 46.0943 33.8952 19.2608 25.5122

CAGE analysis