Hb_007304_120

Information

Type -
Description -
Location Contig7304: 149911-155576
Sequence    

Annotation

kegg
ID tcc:TCM_035747
description NAD(P)-binding Rossmann-fold superfamily protein isoform 1
nr
ID XP_007019624.1
description NAD(P)-binding Rossmann-fold superfamily protein isoform 1 [Theobroma cacao]
swissprot
ID A6QP05
description Dehydrogenase/reductase SDR family member 12 OS=Bos taurus GN=DHRS12 PE=2 SV=1
trembl
ID A0A061FQP1
description NAD(P)-binding Rossmann-fold superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_035747 PE=4 SV=1
Gene Ontology
ID GO:0016491
description dehydrogenase reductase sdr family member 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55939: 149916-155544 , PASA_asmbl_55940: 152248-152742 , PASA_asmbl_55941: 151235-151692 , PASA_asmbl_55942: 154198-154602 , PASA_asmbl_55943: 153381-153539
cDNA
(Sanger)
(ID:Location)		 020_B13.ab1: 149916-154940 , 050_J12.ab1: 149913-153913

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007304_120 0.0 - - NAD(P)-binding Rossmann-fold superfamily protein isoform 1 [Theobroma cacao]
2 Hb_000336_150 0.0587114098 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
3 Hb_003387_060 0.0649168059 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012286_030 0.0808969117 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
5 Hb_002016_150 0.0816434862 - - PREDICTED: uncharacterized protein LOC105642512 [Jatropha curcas]
6 Hb_010368_010 0.0819675553 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
7 Hb_000732_010 0.0820353945 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
8 Hb_013358_040 0.0823129477 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
9 Hb_004109_170 0.0845812486 - - PREDICTED: probable ribokinase [Jatropha curcas]
10 Hb_003001_080 0.0855193138 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
11 Hb_000331_550 0.0864689174 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
12 Hb_005116_160 0.0884126926 transcription factor TF Family: TRAF -
13 Hb_005846_040 0.0887503077 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
14 Hb_000729_030 0.0904726727 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
15 Hb_000684_470 0.0904790403 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
16 Hb_000373_070 0.0909518385 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
17 Hb_000030_030 0.0913388659 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
18 Hb_000260_030 0.0917766388 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
19 Hb_006615_240 0.0920279323 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
20 Hb_005779_060 0.092742731 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007304_120 Hb_007304_120 Hb_000336_150 Hb_000336_150 Hb_007304_120--Hb_000336_150 Hb_003387_060 Hb_003387_060 Hb_007304_120--Hb_003387_060 Hb_012286_030 Hb_012286_030 Hb_007304_120--Hb_012286_030 Hb_002016_150 Hb_002016_150 Hb_007304_120--Hb_002016_150 Hb_010368_010 Hb_010368_010 Hb_007304_120--Hb_010368_010 Hb_000732_010 Hb_000732_010 Hb_007304_120--Hb_000732_010 Hb_000729_030 Hb_000729_030 Hb_000336_150--Hb_000729_030 Hb_006615_240 Hb_006615_240 Hb_000336_150--Hb_006615_240 Hb_003582_060 Hb_003582_060 Hb_000336_150--Hb_003582_060 Hb_000205_090 Hb_000205_090 Hb_000336_150--Hb_000205_090 Hb_004109_170 Hb_004109_170 Hb_000336_150--Hb_004109_170 Hb_014720_120 Hb_014720_120 Hb_003387_060--Hb_014720_120 Hb_003387_060--Hb_012286_030 Hb_002245_030 Hb_002245_030 Hb_003387_060--Hb_002245_030 Hb_000220_040 Hb_000220_040 Hb_003387_060--Hb_000220_040 Hb_008511_120 Hb_008511_120 Hb_003387_060--Hb_008511_120 Hb_000527_060 Hb_000527_060 Hb_012286_030--Hb_000527_060 Hb_000580_090 Hb_000580_090 Hb_012286_030--Hb_000580_090 Hb_012286_030--Hb_004109_170 Hb_000676_180 Hb_000676_180 Hb_012286_030--Hb_000676_180 Hb_004116_190 Hb_004116_190 Hb_012286_030--Hb_004116_190 Hb_005846_040 Hb_005846_040 Hb_012286_030--Hb_005846_040 Hb_000679_010 Hb_000679_010 Hb_002016_150--Hb_000679_010 Hb_000771_120 Hb_000771_120 Hb_002016_150--Hb_000771_120 Hb_000462_130 Hb_000462_130 Hb_002016_150--Hb_000462_130 Hb_000521_320 Hb_000521_320 Hb_002016_150--Hb_000521_320 Hb_003747_200 Hb_003747_200 Hb_002016_150--Hb_003747_200 Hb_013358_040 Hb_013358_040 Hb_010368_010--Hb_013358_040 Hb_008013_050 Hb_008013_050 Hb_010368_010--Hb_008013_050 Hb_000699_030 Hb_000699_030 Hb_010368_010--Hb_000699_030 Hb_010368_010--Hb_000729_030 Hb_010368_010--Hb_000336_150 Hb_000069_380 Hb_000069_380 Hb_010368_010--Hb_000069_380 Hb_002232_410 Hb_002232_410 Hb_000732_010--Hb_002232_410 Hb_065525_040 Hb_065525_040 Hb_000732_010--Hb_065525_040 Hb_000331_550 Hb_000331_550 Hb_000732_010--Hb_000331_550 Hb_002205_110 Hb_002205_110 Hb_000732_010--Hb_002205_110 Hb_000708_030 Hb_000708_030 Hb_000732_010--Hb_000708_030 Hb_001205_240 Hb_001205_240 Hb_000732_010--Hb_001205_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.6131 51.3919 51.718 43.4348 53.237 34.0723
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
73.8804 65.7513 65.604 32.3418 37.1768

CAGE analysis