Hb_008013_050

Information

Type transcription factor
Description TF Family: PHD
Location Contig8013: 50906-54491
Sequence    

Annotation

kegg
ID rcu:RCOM_0868160
description DNA binding protein, putative
nr
ID XP_012072636.1
description PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
swissprot
ID Q9C810
description PHD finger protein At1g33420 OS=Arabidopsis thaliana GN=At1g33420 PE=1 SV=1
trembl
ID A0A067KS47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06700 PE=4 SV=1
Gene Ontology
ID GO:0008270
description phd finger protein at1g33420

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58792: 50858-52251 , PASA_asmbl_58793: 52272-54309
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008013_050 0.0 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
2 Hb_006059_050 0.0592962162 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
3 Hb_002301_150 0.0641347205 - - Drought-responsive family protein [Theobroma cacao]
4 Hb_003502_060 0.0641945417 - - PREDICTED: alpha-1,3/1,6-mannosyltransferase ALG2 [Jatropha curcas]
5 Hb_003151_040 0.0662969408 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
6 Hb_010098_050 0.0684523364 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
7 Hb_000030_030 0.0686034006 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
8 Hb_010368_010 0.0718823662 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
9 Hb_002232_410 0.073699565 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
10 Hb_000152_500 0.0798545405 - - PREDICTED: probable mitochondrial intermediate peptidase, mitochondrial [Jatropha curcas]
11 Hb_003582_060 0.0806619427 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
12 Hb_019280_050 0.0806996154 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 [Jatropha curcas]
13 Hb_000205_090 0.0809331325 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
14 Hb_000460_030 0.0815563179 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
15 Hb_021068_040 0.081966069 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
16 Hb_006615_240 0.0852798998 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
17 Hb_032808_010 0.0854920962 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
18 Hb_005271_220 0.0858797794 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
19 Hb_001703_060 0.0872178768 - - protein kinase, putative [Ricinus communis]
20 Hb_000069_720 0.0879664293 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]

Gene co-expression network

sample Hb_008013_050 Hb_008013_050 Hb_006059_050 Hb_006059_050 Hb_008013_050--Hb_006059_050 Hb_002301_150 Hb_002301_150 Hb_008013_050--Hb_002301_150 Hb_003502_060 Hb_003502_060 Hb_008013_050--Hb_003502_060 Hb_003151_040 Hb_003151_040 Hb_008013_050--Hb_003151_040 Hb_010098_050 Hb_010098_050 Hb_008013_050--Hb_010098_050 Hb_000030_030 Hb_000030_030 Hb_008013_050--Hb_000030_030 Hb_006059_050--Hb_003151_040 Hb_172426_040 Hb_172426_040 Hb_006059_050--Hb_172426_040 Hb_000373_070 Hb_000373_070 Hb_006059_050--Hb_000373_070 Hb_005846_040 Hb_005846_040 Hb_006059_050--Hb_005846_040 Hb_000152_500 Hb_000152_500 Hb_006059_050--Hb_000152_500 Hb_002301_150--Hb_003502_060 Hb_004108_220 Hb_004108_220 Hb_002301_150--Hb_004108_220 Hb_002301_150--Hb_000030_030 Hb_006846_130 Hb_006846_130 Hb_002301_150--Hb_006846_130 Hb_168978_010 Hb_168978_010 Hb_002301_150--Hb_168978_010 Hb_003502_060--Hb_000030_030 Hb_089032_030 Hb_089032_030 Hb_003502_060--Hb_089032_030 Hb_003502_060--Hb_003151_040 Hb_015778_010 Hb_015778_010 Hb_003502_060--Hb_015778_010 Hb_003151_040--Hb_005846_040 Hb_001766_060 Hb_001766_060 Hb_003151_040--Hb_001766_060 Hb_003151_040--Hb_000373_070 Hb_003151_040--Hb_000152_500 Hb_000001_060 Hb_000001_060 Hb_003151_040--Hb_000001_060 Hb_006615_240 Hb_006615_240 Hb_010098_050--Hb_006615_240 Hb_001341_150 Hb_001341_150 Hb_010098_050--Hb_001341_150 Hb_000205_090 Hb_000205_090 Hb_010098_050--Hb_000205_090 Hb_019280_050 Hb_019280_050 Hb_010098_050--Hb_019280_050 Hb_000431_170 Hb_000431_170 Hb_010098_050--Hb_000431_170 Hb_000030_030--Hb_005846_040 Hb_001703_060 Hb_001703_060 Hb_000030_030--Hb_001703_060 Hb_002232_410 Hb_002232_410 Hb_000030_030--Hb_002232_410 Hb_000030_030--Hb_003151_040 Hb_000030_030--Hb_168978_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.43586 2.97336 4.35243 3.90444 1.9958 3.18204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.43011 5.39162 3.90821 3.42504 2.88206

CAGE analysis