Hb_015778_010

Information

Type -
Description -
Location Contig15778: 40610-51714
Sequence    

Annotation

kegg
ID rcu:RCOM_1197790
description amsh, putative
nr
ID XP_012093028.1
description PREDICTED: AMSH-like ubiquitin thioesterase 1 [Jatropha curcas]
swissprot
ID Q8VYB5
description AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana GN=AMSH1 PE=2 SV=1
trembl
ID A0A067JBM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05907 PE=4 SV=1
Gene Ontology
ID GO:0005622
description amsh-like ubiquitin thioesterase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13786: 40635-51771 , PASA_asmbl_13788: 47036-51767 , PASA_asmbl_13791: 49298-49702
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015778_010 0.0 - - PREDICTED: AMSH-like ubiquitin thioesterase 1 [Jatropha curcas]
2 Hb_002007_210 0.0569963961 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
3 Hb_006420_080 0.0614621718 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_003502_060 0.0745843875 - - PREDICTED: alpha-1,3/1,6-mannosyltransferase ALG2 [Jatropha curcas]
5 Hb_000414_130 0.0791511396 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
6 Hb_005306_180 0.0802469888 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
7 Hb_011344_190 0.0804467126 - - PREDICTED: maspardin [Jatropha curcas]
8 Hb_076233_040 0.0832012098 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
9 Hb_004078_040 0.085932114 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
10 Hb_000477_060 0.0872494497 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
11 Hb_005488_200 0.0877941839 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
12 Hb_001507_040 0.0879102031 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010883_050 0.0886162667 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
14 Hb_004837_160 0.0896171948 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
15 Hb_008616_070 0.0896535652 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
16 Hb_004705_120 0.0915520787 - - ATP binding protein, putative [Ricinus communis]
17 Hb_089032_030 0.0920005602 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
18 Hb_003697_040 0.0941220896 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
19 Hb_000030_030 0.0949966729 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
20 Hb_003349_090 0.0950833861 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_015778_010 Hb_015778_010 Hb_002007_210 Hb_002007_210 Hb_015778_010--Hb_002007_210 Hb_006420_080 Hb_006420_080 Hb_015778_010--Hb_006420_080 Hb_003502_060 Hb_003502_060 Hb_015778_010--Hb_003502_060 Hb_000414_130 Hb_000414_130 Hb_015778_010--Hb_000414_130 Hb_005306_180 Hb_005306_180 Hb_015778_010--Hb_005306_180 Hb_011344_190 Hb_011344_190 Hb_015778_010--Hb_011344_190 Hb_004837_160 Hb_004837_160 Hb_002007_210--Hb_004837_160 Hb_010883_050 Hb_010883_050 Hb_002007_210--Hb_010883_050 Hb_152784_010 Hb_152784_010 Hb_002007_210--Hb_152784_010 Hb_003349_090 Hb_003349_090 Hb_002007_210--Hb_003349_090 Hb_009615_070 Hb_009615_070 Hb_002007_210--Hb_009615_070 Hb_006420_080--Hb_010883_050 Hb_001902_140 Hb_001902_140 Hb_006420_080--Hb_001902_140 Hb_000982_080 Hb_000982_080 Hb_006420_080--Hb_000982_080 Hb_001489_080 Hb_001489_080 Hb_006420_080--Hb_001489_080 Hb_003697_040 Hb_003697_040 Hb_006420_080--Hb_003697_040 Hb_000030_030 Hb_000030_030 Hb_003502_060--Hb_000030_030 Hb_008013_050 Hb_008013_050 Hb_003502_060--Hb_008013_050 Hb_002301_150 Hb_002301_150 Hb_003502_060--Hb_002301_150 Hb_089032_030 Hb_089032_030 Hb_003502_060--Hb_089032_030 Hb_003151_040 Hb_003151_040 Hb_003502_060--Hb_003151_040 Hb_001653_020 Hb_001653_020 Hb_000414_130--Hb_001653_020 Hb_000665_050 Hb_000665_050 Hb_000414_130--Hb_000665_050 Hb_000414_130--Hb_000030_030 Hb_000414_130--Hb_003502_060 Hb_000414_130--Hb_005306_180 Hb_000483_260 Hb_000483_260 Hb_005306_180--Hb_000483_260 Hb_005306_180--Hb_000665_050 Hb_000787_020 Hb_000787_020 Hb_005306_180--Hb_000787_020 Hb_001016_120 Hb_001016_120 Hb_005306_180--Hb_001016_120 Hb_002014_020 Hb_002014_020 Hb_005306_180--Hb_002014_020 Hb_011344_190--Hb_000982_080 Hb_003376_250 Hb_003376_250 Hb_011344_190--Hb_003376_250 Hb_008232_010 Hb_008232_010 Hb_011344_190--Hb_008232_010 Hb_005488_200 Hb_005488_200 Hb_011344_190--Hb_005488_200 Hb_003633_050 Hb_003633_050 Hb_011344_190--Hb_003633_050 Hb_001222_080 Hb_001222_080 Hb_011344_190--Hb_001222_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9058 15.9562 16.5858 31.7206 11.4427 18.5847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.8813 30.6673 42.8927 24.2715 19.0552

CAGE analysis