Hb_005488_200

Information

Type -
Description -
Location Contig5488: 138019-149833
Sequence    

Annotation

kegg
ID pop:POPTR_0013s07280g
description POPTRDRAFT_242255; hypothetical protein
nr
ID XP_012070280.1
description PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
swissprot
ID Q9P6P3
description Serine/threonine-protein kinase ppk15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ppk15 PE=1 SV=1
trembl
ID A0A067KTL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02586 PE=4 SV=1
Gene Ontology
ID GO:0005829
description serine threonine-protein kinase minibrain-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48133: 138779-139281 , PASA_asmbl_48134: 139764-141754 , PASA_asmbl_48135: 143344-143629
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005488_200 0.0 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
2 Hb_000982_080 0.0582210538 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
3 Hb_007416_060 0.0594088391 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
4 Hb_003376_250 0.060842378 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
5 Hb_148113_010 0.065099627 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17C-like isoform X3 [Citrus sinensis]
6 Hb_000603_080 0.0651067523 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
7 Hb_003697_040 0.0687949271 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
8 Hb_011344_190 0.0709268852 - - PREDICTED: maspardin [Jatropha curcas]
9 Hb_004837_160 0.0757017678 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
10 Hb_004078_040 0.0771555378 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
11 Hb_006420_080 0.0772966031 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_000820_090 0.0779037761 - - -
13 Hb_000436_130 0.0780655854 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
14 Hb_000291_080 0.078308914 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
15 Hb_008232_010 0.0790529397 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
16 Hb_000016_160 0.079080932 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
17 Hb_001222_080 0.080269253 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
18 Hb_009803_050 0.0809838706 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
19 Hb_001390_130 0.0809977362 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
20 Hb_010812_120 0.0813353967 - - hypothetical protein JCGZ_03293 [Jatropha curcas]

Gene co-expression network

sample Hb_005488_200 Hb_005488_200 Hb_000982_080 Hb_000982_080 Hb_005488_200--Hb_000982_080 Hb_007416_060 Hb_007416_060 Hb_005488_200--Hb_007416_060 Hb_003376_250 Hb_003376_250 Hb_005488_200--Hb_003376_250 Hb_148113_010 Hb_148113_010 Hb_005488_200--Hb_148113_010 Hb_000603_080 Hb_000603_080 Hb_005488_200--Hb_000603_080 Hb_003697_040 Hb_003697_040 Hb_005488_200--Hb_003697_040 Hb_000982_080--Hb_003376_250 Hb_011344_190 Hb_011344_190 Hb_000982_080--Hb_011344_190 Hb_001195_200 Hb_001195_200 Hb_000982_080--Hb_001195_200 Hb_008232_010 Hb_008232_010 Hb_000982_080--Hb_008232_010 Hb_006420_080 Hb_006420_080 Hb_000982_080--Hb_006420_080 Hb_000116_260 Hb_000116_260 Hb_007416_060--Hb_000116_260 Hb_000783_020 Hb_000783_020 Hb_007416_060--Hb_000783_020 Hb_001489_080 Hb_001489_080 Hb_007416_060--Hb_001489_080 Hb_007416_060--Hb_003376_250 Hb_000436_130 Hb_000436_130 Hb_007416_060--Hb_000436_130 Hb_003376_250--Hb_011344_190 Hb_003376_250--Hb_001195_200 Hb_000327_180 Hb_000327_180 Hb_003376_250--Hb_000327_180 Hb_000023_090 Hb_000023_090 Hb_148113_010--Hb_000023_090 Hb_000072_180 Hb_000072_180 Hb_148113_010--Hb_000072_180 Hb_000046_350 Hb_000046_350 Hb_148113_010--Hb_000046_350 Hb_028515_010 Hb_028515_010 Hb_148113_010--Hb_028515_010 Hb_000120_020 Hb_000120_020 Hb_148113_010--Hb_000120_020 Hb_009803_050 Hb_009803_050 Hb_000603_080--Hb_009803_050 Hb_001314_070 Hb_001314_070 Hb_000603_080--Hb_001314_070 Hb_001504_330 Hb_001504_330 Hb_000603_080--Hb_001504_330 Hb_000603_080--Hb_000982_080 Hb_003994_260 Hb_003994_260 Hb_000603_080--Hb_003994_260 Hb_000477_060 Hb_000477_060 Hb_003697_040--Hb_000477_060 Hb_003605_090 Hb_003605_090 Hb_003697_040--Hb_003605_090 Hb_003053_020 Hb_003053_020 Hb_003697_040--Hb_003053_020 Hb_004934_100 Hb_004934_100 Hb_003697_040--Hb_004934_100 Hb_004889_010 Hb_004889_010 Hb_003697_040--Hb_004889_010 Hb_003697_040--Hb_000783_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.33848 5.44866 5.06902 10.952 5.095 6.42997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.9067 14.5333 16.8618 10.3124 8.99676

CAGE analysis