Hb_001314_070

Information

Type -
Description -
Location Contig1314: 222614-226037
Sequence    

Annotation

kegg
ID rcu:RCOM_0494120
description hypothetical protein
nr
ID XP_002531244.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q93V84
description Protein FLX-like 1 OS=Arabidopsis thaliana GN=FLXL1 PE=1 SV=1
trembl
ID B9SZ25
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0494120 PE=4 SV=1
Gene Ontology
ID GO:0048573
description protein flx-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09171: 225658-231288 , PASA_asmbl_09172: 223015-225862 , PASA_asmbl_09176: 225899-226154
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001314_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000603_080 0.0603234825 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
3 Hb_000393_020 0.0714796573 - - lipid binding protein, putative [Ricinus communis]
4 Hb_000250_060 0.0721218982 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
5 Hb_010812_120 0.0746842268 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
6 Hb_000483_260 0.0748079746 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
7 Hb_004117_260 0.0783181842 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003994_260 0.0792724653 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
9 Hb_000049_210 0.0816865652 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
10 Hb_001633_210 0.0824383428 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
11 Hb_000928_070 0.082864168 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
12 Hb_031910_020 0.0831727002 - - PREDICTED: exocyst complex component SEC15A [Jatropha curcas]
13 Hb_009803_050 0.0841275924 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
14 Hb_000003_230 0.0841813689 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
15 Hb_003304_020 0.084493009 - - Polyadenylate-binding protein RBP47C [Glycine soja]
16 Hb_020805_130 0.0859278541 - - protein phosphatase 2c, putative [Ricinus communis]
17 Hb_022250_060 0.089301688 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X1 [Jatropha curcas]
18 Hb_001726_020 0.0897301747 - - PREDICTED: endophilin-A1 [Jatropha curcas]
19 Hb_001489_080 0.0909284191 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
20 Hb_001507_040 0.0912084958 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001314_070 Hb_001314_070 Hb_000603_080 Hb_000603_080 Hb_001314_070--Hb_000603_080 Hb_000393_020 Hb_000393_020 Hb_001314_070--Hb_000393_020 Hb_000250_060 Hb_000250_060 Hb_001314_070--Hb_000250_060 Hb_010812_120 Hb_010812_120 Hb_001314_070--Hb_010812_120 Hb_000483_260 Hb_000483_260 Hb_001314_070--Hb_000483_260 Hb_004117_260 Hb_004117_260 Hb_001314_070--Hb_004117_260 Hb_009803_050 Hb_009803_050 Hb_000603_080--Hb_009803_050 Hb_005488_200 Hb_005488_200 Hb_000603_080--Hb_005488_200 Hb_001504_330 Hb_001504_330 Hb_000603_080--Hb_001504_330 Hb_000982_080 Hb_000982_080 Hb_000603_080--Hb_000982_080 Hb_003994_260 Hb_003994_260 Hb_000603_080--Hb_003994_260 Hb_000393_020--Hb_004117_260 Hb_004078_040 Hb_004078_040 Hb_000393_020--Hb_004078_040 Hb_000349_260 Hb_000349_260 Hb_000393_020--Hb_000349_260 Hb_001300_150 Hb_001300_150 Hb_000393_020--Hb_001300_150 Hb_000928_070 Hb_000928_070 Hb_000393_020--Hb_000928_070 Hb_001633_210 Hb_001633_210 Hb_000250_060--Hb_001633_210 Hb_005539_280 Hb_005539_280 Hb_000250_060--Hb_005539_280 Hb_001726_020 Hb_001726_020 Hb_000250_060--Hb_001726_020 Hb_000297_010 Hb_000297_010 Hb_000250_060--Hb_000297_010 Hb_000250_060--Hb_010812_120 Hb_002046_180 Hb_002046_180 Hb_000250_060--Hb_002046_180 Hb_003349_090 Hb_003349_090 Hb_010812_120--Hb_003349_090 Hb_010812_120--Hb_001633_210 Hb_089032_030 Hb_089032_030 Hb_010812_120--Hb_089032_030 Hb_000016_160 Hb_000016_160 Hb_010812_120--Hb_000016_160 Hb_010812_120--Hb_003994_260 Hb_000460_030 Hb_000460_030 Hb_000483_260--Hb_000460_030 Hb_000483_260--Hb_003994_260 Hb_000787_020 Hb_000787_020 Hb_000483_260--Hb_000787_020 Hb_001218_030 Hb_001218_030 Hb_000483_260--Hb_001218_030 Hb_005306_180 Hb_005306_180 Hb_000483_260--Hb_005306_180 Hb_003657_010 Hb_003657_010 Hb_004117_260--Hb_003657_010 Hb_050622_050 Hb_050622_050 Hb_004117_260--Hb_050622_050 Hb_006017_010 Hb_006017_010 Hb_004117_260--Hb_006017_010 Hb_000926_090 Hb_000926_090 Hb_004117_260--Hb_000926_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5402 23.9781 24.9838 21.7536 15.1583 16.5227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.7041 41.1928 46.7415 30.6637 25.9628

CAGE analysis