Hb_000483_260

Information

Type -
Description -
Location Contig483: 246522-250163
Sequence    

Annotation

kegg
ID vvi:100245511
description dihydroorotase, mitochondrial
nr
ID XP_011047655.1
description PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
swissprot
ID O04904
description Dihydroorotase, mitochondrial OS=Arabidopsis thaliana GN=PYR4 PE=2 SV=1
trembl
ID A0A067KHQ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10498 PE=3 SV=1
Gene Ontology
ID GO:0009507
description mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44821: 246517-247034 , PASA_asmbl_44822: 247069-250050
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_260 0.0 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
2 Hb_000460_030 0.0672253562 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
3 Hb_003994_260 0.0682942101 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
4 Hb_000787_020 0.0701534642 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_001218_030 0.0705588119 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
6 Hb_005306_180 0.0716831222 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
7 Hb_001314_070 0.0748079746 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000049_210 0.075600533 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
9 Hb_001016_120 0.0758661141 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
10 Hb_010812_120 0.0764521526 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
11 Hb_003304_020 0.0775386404 - - Polyadenylate-binding protein RBP47C [Glycine soja]
12 Hb_002481_080 0.0785337449 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
13 Hb_001633_210 0.0787634764 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
14 Hb_000853_150 0.0800859392 - - Fumarase 1 isoform 2 [Theobroma cacao]
15 Hb_000003_230 0.0817828005 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
16 Hb_000393_020 0.0829723334 - - lipid binding protein, putative [Ricinus communis]
17 Hb_002014_020 0.0842714143 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
18 Hb_000890_150 0.0856075139 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
19 Hb_000250_060 0.0866773357 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
20 Hb_002217_350 0.087140085 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000483_260 Hb_000483_260 Hb_000460_030 Hb_000460_030 Hb_000483_260--Hb_000460_030 Hb_003994_260 Hb_003994_260 Hb_000483_260--Hb_003994_260 Hb_000787_020 Hb_000787_020 Hb_000483_260--Hb_000787_020 Hb_001218_030 Hb_001218_030 Hb_000483_260--Hb_001218_030 Hb_005306_180 Hb_005306_180 Hb_000483_260--Hb_005306_180 Hb_001314_070 Hb_001314_070 Hb_000483_260--Hb_001314_070 Hb_006570_080 Hb_006570_080 Hb_000460_030--Hb_006570_080 Hb_000431_170 Hb_000431_170 Hb_000460_030--Hb_000431_170 Hb_003582_060 Hb_003582_060 Hb_000460_030--Hb_003582_060 Hb_005588_060 Hb_005588_060 Hb_000460_030--Hb_005588_060 Hb_008725_230 Hb_008725_230 Hb_000460_030--Hb_008725_230 Hb_000069_420 Hb_000069_420 Hb_003994_260--Hb_000069_420 Hb_000258_260 Hb_000258_260 Hb_003994_260--Hb_000258_260 Hb_010812_120 Hb_010812_120 Hb_003994_260--Hb_010812_120 Hb_004324_090 Hb_004324_090 Hb_003994_260--Hb_004324_090 Hb_000603_080 Hb_000603_080 Hb_003994_260--Hb_000603_080 Hb_084646_010 Hb_084646_010 Hb_000787_020--Hb_084646_010 Hb_000890_150 Hb_000890_150 Hb_000787_020--Hb_000890_150 Hb_155159_020 Hb_155159_020 Hb_000787_020--Hb_155159_020 Hb_000049_210 Hb_000049_210 Hb_000787_020--Hb_000049_210 Hb_000140_380 Hb_000140_380 Hb_000787_020--Hb_000140_380 Hb_000853_150 Hb_000853_150 Hb_001218_030--Hb_000853_150 Hb_000920_200 Hb_000920_200 Hb_001218_030--Hb_000920_200 Hb_001828_150 Hb_001828_150 Hb_001218_030--Hb_001828_150 Hb_000200_020 Hb_000200_020 Hb_001218_030--Hb_000200_020 Hb_001123_040 Hb_001123_040 Hb_001218_030--Hb_001123_040 Hb_000665_050 Hb_000665_050 Hb_005306_180--Hb_000665_050 Hb_005306_180--Hb_000787_020 Hb_001016_120 Hb_001016_120 Hb_005306_180--Hb_001016_120 Hb_015778_010 Hb_015778_010 Hb_005306_180--Hb_015778_010 Hb_002014_020 Hb_002014_020 Hb_005306_180--Hb_002014_020 Hb_001314_070--Hb_000603_080 Hb_000393_020 Hb_000393_020 Hb_001314_070--Hb_000393_020 Hb_000250_060 Hb_000250_060 Hb_001314_070--Hb_000250_060 Hb_001314_070--Hb_010812_120 Hb_004117_260 Hb_004117_260 Hb_001314_070--Hb_004117_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.19364 5.65008 6.68036 7.97462 4.5674 5.44257
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.57916 10.7036 11.7558 11.0999 5.06231

CAGE analysis