Hb_001123_040

Information

Type -
Description -
Location Contig1123: 16397-19976
Sequence    

Annotation

kegg
ID rcu:RCOM_1437470
description hypothetical protein
nr
ID XP_012088772.1
description PREDICTED: R3H domain-containing protein 1-like [Jatropha curcas]
swissprot
ID Q15032
description R3H domain-containing protein 1 OS=Homo sapiens GN=R3HDM1 PE=1 SV=3
trembl
ID A0A067JH99
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23134 PE=4 SV=1
Gene Ontology
ID GO:0003676
description single-stranded nucleic acid binding r3h isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03717: 16501-19977 , PASA_asmbl_03719: 16534-17076
cDNA
(Sanger)
(ID:Location)		 025_F02.ab1: 16501-19127

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_040 0.0 - - PREDICTED: R3H domain-containing protein 1-like [Jatropha curcas]
2 Hb_004157_050 0.0641278069 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
3 Hb_001218_030 0.0699077058 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
4 Hb_000069_720 0.0747053514 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
5 Hb_004934_100 0.0753046894 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000035_180 0.076477738 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
7 Hb_001828_150 0.0767181647 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
8 Hb_000460_030 0.0770749022 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
9 Hb_000200_020 0.0788277007 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
10 Hb_001489_080 0.0795735592 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
11 Hb_005054_110 0.0798943351 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
12 Hb_002007_080 0.0813721431 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
13 Hb_001301_110 0.0824107097 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
14 Hb_000327_180 0.082478808 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
15 Hb_007479_040 0.0830151707 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002994_030 0.0837726311 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-like [Pyrus x bretschneideri]
17 Hb_000146_070 0.0841156926 - - PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]
18 Hb_000003_230 0.0845161434 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
19 Hb_000665_140 0.0852983742 - - PREDICTED: protein MEMO1 [Jatropha curcas]
20 Hb_001876_050 0.0858013036 - - hypothetical protein JCGZ_01286 [Jatropha curcas]

Gene co-expression network

sample Hb_001123_040 Hb_001123_040 Hb_004157_050 Hb_004157_050 Hb_001123_040--Hb_004157_050 Hb_001218_030 Hb_001218_030 Hb_001123_040--Hb_001218_030 Hb_000069_720 Hb_000069_720 Hb_001123_040--Hb_000069_720 Hb_004934_100 Hb_004934_100 Hb_001123_040--Hb_004934_100 Hb_000035_180 Hb_000035_180 Hb_001123_040--Hb_000035_180 Hb_001828_150 Hb_001828_150 Hb_001123_040--Hb_001828_150 Hb_001301_110 Hb_001301_110 Hb_004157_050--Hb_001301_110 Hb_004157_050--Hb_000069_720 Hb_000665_140 Hb_000665_140 Hb_004157_050--Hb_000665_140 Hb_003058_120 Hb_003058_120 Hb_004157_050--Hb_003058_120 Hb_011218_090 Hb_011218_090 Hb_004157_050--Hb_011218_090 Hb_000853_150 Hb_000853_150 Hb_001218_030--Hb_000853_150 Hb_000920_200 Hb_000920_200 Hb_001218_030--Hb_000920_200 Hb_001218_030--Hb_001828_150 Hb_000200_020 Hb_000200_020 Hb_001218_030--Hb_000200_020 Hb_000483_260 Hb_000483_260 Hb_001218_030--Hb_000483_260 Hb_000069_720--Hb_001301_110 Hb_003878_090 Hb_003878_090 Hb_000069_720--Hb_003878_090 Hb_003678_020 Hb_003678_020 Hb_000069_720--Hb_003678_020 Hb_000167_010 Hb_000167_010 Hb_000069_720--Hb_000167_010 Hb_000840_200 Hb_000840_200 Hb_000069_720--Hb_000840_200 Hb_000599_250 Hb_000599_250 Hb_004934_100--Hb_000599_250 Hb_008453_030 Hb_008453_030 Hb_004934_100--Hb_008453_030 Hb_001489_080 Hb_001489_080 Hb_004934_100--Hb_001489_080 Hb_000421_220 Hb_000421_220 Hb_004934_100--Hb_000421_220 Hb_003697_040 Hb_003697_040 Hb_004934_100--Hb_003697_040 Hb_000985_030 Hb_000985_030 Hb_004934_100--Hb_000985_030 Hb_000146_070 Hb_000146_070 Hb_000035_180--Hb_000146_070 Hb_156279_020 Hb_156279_020 Hb_000035_180--Hb_156279_020 Hb_002078_350 Hb_002078_350 Hb_000035_180--Hb_002078_350 Hb_007479_040 Hb_007479_040 Hb_000035_180--Hb_007479_040 Hb_000340_180 Hb_000340_180 Hb_000035_180--Hb_000340_180 Hb_000331_260 Hb_000331_260 Hb_000035_180--Hb_000331_260 Hb_006573_190 Hb_006573_190 Hb_001828_150--Hb_006573_190 Hb_008841_020 Hb_008841_020 Hb_001828_150--Hb_008841_020 Hb_001828_150--Hb_000853_150 Hb_121729_010 Hb_121729_010 Hb_001828_150--Hb_121729_010 Hb_000381_120 Hb_000381_120 Hb_001828_150--Hb_000381_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.92386 6.19647 9.4595 8.4362 5.5497 8.339
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1073 10.6441 10.5992 10.5936 9.19368

CAGE analysis