Hb_000069_720

Information

Type -
Description -
Location Contig69: 731824-734963
Sequence    

Annotation

kegg
ID rcu:RCOM_0490080
description Exosome complex exonuclease RRP41, putative (EC:2.7.7.56)
nr
ID XP_012092732.1
description PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
swissprot
ID Q921I9
description Exosome complex component RRP41 OS=Mus musculus GN=Exosc4 PE=2 SV=3
trembl
ID A0A067JJT1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08634 PE=4 SV=1
Gene Ontology
ID GO:0005829
description exosome complex component rrp41 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54296: 732935-733608 , PASA_asmbl_54297: 731868-735006
cDNA
(Sanger)
(ID:Location)		 023_M07.ab1: 731868-733691 , 029_M07.ab1: 731876-733091 , 046_M08.ab1: 731873-734637

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_720 0.0 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
2 Hb_001301_110 0.0507992391 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
3 Hb_004157_050 0.0539778799 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
4 Hb_003878_090 0.0631396504 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
5 Hb_003678_020 0.0636133673 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000167_010 0.0676460593 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000840_200 0.0712032087 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
8 Hb_005588_060 0.0720722302 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
9 Hb_000110_250 0.0730806644 - - PREDICTED: homologous-pairing protein 2 homolog [Jatropha curcas]
10 Hb_001189_070 0.073608064 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
11 Hb_189216_020 0.0737530564 - - PREDICTED: translin [Jatropha curcas]
12 Hb_000948_160 0.0740279515 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
13 Hb_001123_040 0.0747053514 - - PREDICTED: R3H domain-containing protein 1-like [Jatropha curcas]
14 Hb_003058_120 0.0755392001 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
15 Hb_006570_080 0.0773035974 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
16 Hb_001472_100 0.0778442506 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
17 Hb_007894_060 0.0781287236 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
18 Hb_004545_110 0.0782997587 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
19 Hb_000347_240 0.0789147623 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
20 Hb_006573_190 0.0797496239 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000069_720 Hb_000069_720 Hb_001301_110 Hb_001301_110 Hb_000069_720--Hb_001301_110 Hb_004157_050 Hb_004157_050 Hb_000069_720--Hb_004157_050 Hb_003878_090 Hb_003878_090 Hb_000069_720--Hb_003878_090 Hb_003678_020 Hb_003678_020 Hb_000069_720--Hb_003678_020 Hb_000167_010 Hb_000167_010 Hb_000069_720--Hb_000167_010 Hb_000840_200 Hb_000840_200 Hb_000069_720--Hb_000840_200 Hb_001301_110--Hb_004157_050 Hb_005588_060 Hb_005588_060 Hb_001301_110--Hb_005588_060 Hb_000665_140 Hb_000665_140 Hb_001301_110--Hb_000665_140 Hb_001301_110--Hb_000167_010 Hb_007894_060 Hb_007894_060 Hb_001301_110--Hb_007894_060 Hb_004157_050--Hb_000665_140 Hb_001123_040 Hb_001123_040 Hb_004157_050--Hb_001123_040 Hb_003058_120 Hb_003058_120 Hb_004157_050--Hb_003058_120 Hb_011218_090 Hb_011218_090 Hb_004157_050--Hb_011218_090 Hb_000976_120 Hb_000976_120 Hb_003878_090--Hb_000976_120 Hb_003861_060 Hb_003861_060 Hb_003878_090--Hb_003861_060 Hb_014834_150 Hb_014834_150 Hb_003878_090--Hb_014834_150 Hb_003878_090--Hb_000840_200 Hb_133702_010 Hb_133702_010 Hb_003878_090--Hb_133702_010 Hb_000110_250 Hb_000110_250 Hb_003678_020--Hb_000110_250 Hb_014720_110 Hb_014720_110 Hb_003678_020--Hb_014720_110 Hb_003678_020--Hb_001301_110 Hb_000948_160 Hb_000948_160 Hb_003678_020--Hb_000948_160 Hb_189216_020 Hb_189216_020 Hb_003678_020--Hb_189216_020 Hb_000167_010--Hb_003058_120 Hb_002439_010 Hb_002439_010 Hb_000167_010--Hb_002439_010 Hb_003883_060 Hb_003883_060 Hb_000167_010--Hb_003883_060 Hb_001301_150 Hb_001301_150 Hb_000167_010--Hb_001301_150 Hb_023001_040 Hb_023001_040 Hb_000167_010--Hb_023001_040 Hb_002303_020 Hb_002303_020 Hb_000840_200--Hb_002303_020 Hb_002272_270 Hb_002272_270 Hb_000840_200--Hb_002272_270 Hb_157023_020 Hb_157023_020 Hb_000840_200--Hb_157023_020 Hb_015675_040 Hb_015675_040 Hb_000840_200--Hb_015675_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.551 23.5389 39.6212 39.4063 19.3739 26.1145
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.7701 47.7083 25.3749 38.0949 34.1467

CAGE analysis