Hb_133702_010

Information

Type -
Description -
Location Contig133702: 5539-12081
Sequence    

Annotation

kegg
ID rcu:RCOM_1742210
description zinc binding dehydrogenase, putative (EC:1.6.5.5)
nr
ID XP_012074198.1
description PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID Q0VC50
description Reticulon-4-interacting protein 1, mitochondrial OS=Bos taurus GN=RTN4IP1 PE=2 SV=1
trembl
ID A0A067KJI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09822 PE=4 SV=1
Gene Ontology
ID GO:0003960
description reticulon-4-interacting protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09511: 5571-11947
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133702_010 0.0 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_005800_030 0.0512228688 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
3 Hb_004452_120 0.0613715127 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
4 Hb_004545_110 0.0630289354 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
5 Hb_000721_030 0.0653297977 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase mevalonate diphosphate decarboxylase [Hevea brasiliensis]
6 Hb_007975_060 0.0689633834 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
7 Hb_003878_090 0.0699713888 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
8 Hb_000080_130 0.0703372298 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
9 Hb_000061_180 0.0704669263 - - exonuclease, putative [Ricinus communis]
10 Hb_004754_050 0.0717365159 - - PREDICTED: uncharacterized protein LOC104433925 [Eucalyptus grandis]
11 Hb_000579_120 0.0724494008 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
12 Hb_023371_020 0.0748229106 - - PREDICTED: uncharacterized protein LOC105633512 [Jatropha curcas]
13 Hb_000023_260 0.0761592147 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
14 Hb_003878_150 0.0771452658 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
15 Hb_000212_230 0.0795990152 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
16 Hb_002157_120 0.0811903786 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003153_010 0.0832814111 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
18 Hb_001195_400 0.0851764099 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
19 Hb_010931_130 0.0853944059 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
20 Hb_006153_070 0.0854094266 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_133702_010 Hb_133702_010 Hb_005800_030 Hb_005800_030 Hb_133702_010--Hb_005800_030 Hb_004452_120 Hb_004452_120 Hb_133702_010--Hb_004452_120 Hb_004545_110 Hb_004545_110 Hb_133702_010--Hb_004545_110 Hb_000721_030 Hb_000721_030 Hb_133702_010--Hb_000721_030 Hb_007975_060 Hb_007975_060 Hb_133702_010--Hb_007975_060 Hb_003878_090 Hb_003878_090 Hb_133702_010--Hb_003878_090 Hb_005800_030--Hb_004545_110 Hb_002820_020 Hb_002820_020 Hb_005800_030--Hb_002820_020 Hb_003878_150 Hb_003878_150 Hb_005800_030--Hb_003878_150 Hb_005800_030--Hb_004452_120 Hb_000061_180 Hb_000061_180 Hb_005800_030--Hb_000061_180 Hb_012150_030 Hb_012150_030 Hb_004452_120--Hb_012150_030 Hb_010863_050 Hb_010863_050 Hb_004452_120--Hb_010863_050 Hb_000364_050 Hb_000364_050 Hb_004452_120--Hb_000364_050 Hb_004452_120--Hb_000061_180 Hb_035273_020 Hb_035273_020 Hb_004452_120--Hb_035273_020 Hb_000666_100 Hb_000666_100 Hb_004545_110--Hb_000666_100 Hb_000080_130 Hb_000080_130 Hb_004545_110--Hb_000080_130 Hb_008616_050 Hb_008616_050 Hb_004545_110--Hb_008616_050 Hb_000347_240 Hb_000347_240 Hb_004545_110--Hb_000347_240 Hb_000721_030--Hb_004452_120 Hb_000721_030--Hb_005800_030 Hb_001946_390 Hb_001946_390 Hb_000721_030--Hb_001946_390 Hb_012573_050 Hb_012573_050 Hb_000721_030--Hb_012573_050 Hb_001504_030 Hb_001504_030 Hb_000721_030--Hb_001504_030 Hb_004754_050 Hb_004754_050 Hb_007975_060--Hb_004754_050 Hb_007975_060--Hb_000061_180 Hb_002157_120 Hb_002157_120 Hb_007975_060--Hb_002157_120 Hb_013405_020 Hb_013405_020 Hb_007975_060--Hb_013405_020 Hb_000023_260 Hb_000023_260 Hb_007975_060--Hb_000023_260 Hb_000976_120 Hb_000976_120 Hb_003878_090--Hb_000976_120 Hb_003861_060 Hb_003861_060 Hb_003878_090--Hb_003861_060 Hb_000069_720 Hb_000069_720 Hb_003878_090--Hb_000069_720 Hb_014834_150 Hb_014834_150 Hb_003878_090--Hb_014834_150 Hb_000840_200 Hb_000840_200 Hb_003878_090--Hb_000840_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.60657 5.88412 13.982 16.6753 6.9011 9.27227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6185 11.2663 10.0065 9.17998 16.2498

CAGE analysis