Hb_001504_030

Information

Type -
Description -
Location Contig1504: 28208-29307
Sequence    

Annotation

kegg
ID rcu:RCOM_0470900
description ccr4-associated factor, putative (EC:3.1.13.4)
nr
ID XP_012067515.1
description PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
swissprot
ID Q9SKZ2
description Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2
trembl
ID A0A067L410
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27001 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable ccr4-associated factor 1 homolog 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12629: 28099-29602
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_030 0.0 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
2 Hb_048093_010 0.0807422114 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
3 Hb_000189_480 0.0859229179 - - PREDICTED: uncharacterized protein LOC105111904 isoform X2 [Populus euphratica]
4 Hb_133702_010 0.0878594411 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_001314_080 0.088684399 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
6 Hb_000721_030 0.0888269356 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase mevalonate diphosphate decarboxylase [Hevea brasiliensis]
7 Hb_001102_020 0.0903898782 - - solanesyl diphosphate synthase [Hevea brasiliensis]
8 Hb_000244_180 0.0911964308 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003935_060 0.093232215 - - PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Jatropha curcas]
10 Hb_156850_100 0.0968247833 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
11 Hb_004452_120 0.0984399983 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
12 Hb_000212_120 0.0995491166 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
13 Hb_007975_060 0.1017991552 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
14 Hb_012573_050 0.1022740268 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
15 Hb_012150_030 0.1045849871 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
16 Hb_004754_050 0.1056975688 - - PREDICTED: uncharacterized protein LOC104433925 [Eucalyptus grandis]
17 Hb_001828_040 0.1061891708 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
18 Hb_000023_260 0.1067153508 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
19 Hb_001157_230 0.1082779382 - - Protein AFR, putative [Ricinus communis]
20 Hb_005800_030 0.1091697511 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_001504_030 Hb_001504_030 Hb_048093_010 Hb_048093_010 Hb_001504_030--Hb_048093_010 Hb_000189_480 Hb_000189_480 Hb_001504_030--Hb_000189_480 Hb_133702_010 Hb_133702_010 Hb_001504_030--Hb_133702_010 Hb_001314_080 Hb_001314_080 Hb_001504_030--Hb_001314_080 Hb_000721_030 Hb_000721_030 Hb_001504_030--Hb_000721_030 Hb_001102_020 Hb_001102_020 Hb_001504_030--Hb_001102_020 Hb_000941_100 Hb_000941_100 Hb_048093_010--Hb_000941_100 Hb_003053_110 Hb_003053_110 Hb_048093_010--Hb_003053_110 Hb_012150_030 Hb_012150_030 Hb_048093_010--Hb_012150_030 Hb_156850_100 Hb_156850_100 Hb_048093_010--Hb_156850_100 Hb_000291_180 Hb_000291_180 Hb_048093_010--Hb_000291_180 Hb_134849_010 Hb_134849_010 Hb_048093_010--Hb_134849_010 Hb_113818_010 Hb_113818_010 Hb_000189_480--Hb_113818_010 Hb_000320_340 Hb_000320_340 Hb_000189_480--Hb_000320_340 Hb_000140_340 Hb_000140_340 Hb_000189_480--Hb_000140_340 Hb_001157_230 Hb_001157_230 Hb_000189_480--Hb_001157_230 Hb_007477_050 Hb_007477_050 Hb_000189_480--Hb_007477_050 Hb_005800_030 Hb_005800_030 Hb_133702_010--Hb_005800_030 Hb_004452_120 Hb_004452_120 Hb_133702_010--Hb_004452_120 Hb_004545_110 Hb_004545_110 Hb_133702_010--Hb_004545_110 Hb_133702_010--Hb_000721_030 Hb_007975_060 Hb_007975_060 Hb_133702_010--Hb_007975_060 Hb_003878_090 Hb_003878_090 Hb_133702_010--Hb_003878_090 Hb_010883_040 Hb_010883_040 Hb_001314_080--Hb_010883_040 Hb_000023_260 Hb_000023_260 Hb_001314_080--Hb_000023_260 Hb_015934_120 Hb_015934_120 Hb_001314_080--Hb_015934_120 Hb_000212_230 Hb_000212_230 Hb_001314_080--Hb_000212_230 Hb_000665_130 Hb_000665_130 Hb_001314_080--Hb_000665_130 Hb_000721_030--Hb_004452_120 Hb_000721_030--Hb_005800_030 Hb_001946_390 Hb_001946_390 Hb_000721_030--Hb_001946_390 Hb_012573_050 Hb_012573_050 Hb_000721_030--Hb_012573_050 Hb_003935_060 Hb_003935_060 Hb_001102_020--Hb_003935_060 Hb_001102_020--Hb_000721_030 Hb_001250_070 Hb_001250_070 Hb_001102_020--Hb_001250_070 Hb_000244_180 Hb_000244_180 Hb_001102_020--Hb_000244_180 Hb_003728_100 Hb_003728_100 Hb_001102_020--Hb_003728_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.2126 17.7236 47.8511 57.9429 15.8531 29.2353
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.3124 23.4496 27.5144 18.6513 64.2134

CAGE analysis