Hb_003935_060

Information

Type -
Description -
Location Contig3935: 55582-58923
Sequence    

Annotation

kegg
ID pop:POPTR_0007s14290g
description POPTRDRAFT_719769; hypothetical protein
nr
ID XP_012081660.1
description PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Jatropha curcas]
swissprot
ID Q8VZB2
description Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis thaliana GN=PAS2 PE=1 SV=1
trembl
ID A0A067K0X8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18697 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39410: 58358-58921 , PASA_asmbl_39411: 56010-59084 , PASA_asmbl_39412: 55846-59018
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003935_060 0.0 - - PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Jatropha curcas]
2 Hb_001504_030 0.093232215 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
3 Hb_000365_130 0.1005663853 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
4 Hb_001250_070 0.1014615538 - - ATP-citrate synthase, putative [Ricinus communis]
5 Hb_000721_030 0.1065053802 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase mevalonate diphosphate decarboxylase [Hevea brasiliensis]
6 Hb_001102_020 0.1091061761 - - solanesyl diphosphate synthase [Hevea brasiliensis]
7 Hb_000359_290 0.109510597 - - Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis]
8 Hb_001022_030 0.1158443458 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
9 Hb_000300_200 0.1167331985 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
10 Hb_007975_060 0.1173833714 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
11 Hb_004754_050 0.1177902936 - - PREDICTED: uncharacterized protein LOC104433925 [Eucalyptus grandis]
12 Hb_008566_040 0.118288571 - - PREDICTED: uncharacterized protein LOC105647590 isoform X1 [Jatropha curcas]
13 Hb_156850_100 0.1194887864 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
14 Hb_000796_150 0.1201321846 - - PREDICTED: uncharacterized protein LOC105136996 isoform X1 [Populus euphratica]
15 Hb_000244_180 0.1201642872 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000189_480 0.1212041873 - - PREDICTED: uncharacterized protein LOC105111904 isoform X2 [Populus euphratica]
17 Hb_004116_020 0.1238437348 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
18 Hb_004223_050 0.1248273026 - - hexokinase [Manihot esculenta]
19 Hb_133702_010 0.1252153377 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_009661_030 0.1284805176 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003935_060 Hb_003935_060 Hb_001504_030 Hb_001504_030 Hb_003935_060--Hb_001504_030 Hb_000365_130 Hb_000365_130 Hb_003935_060--Hb_000365_130 Hb_001250_070 Hb_001250_070 Hb_003935_060--Hb_001250_070 Hb_000721_030 Hb_000721_030 Hb_003935_060--Hb_000721_030 Hb_001102_020 Hb_001102_020 Hb_003935_060--Hb_001102_020 Hb_000359_290 Hb_000359_290 Hb_003935_060--Hb_000359_290 Hb_048093_010 Hb_048093_010 Hb_001504_030--Hb_048093_010 Hb_000189_480 Hb_000189_480 Hb_001504_030--Hb_000189_480 Hb_133702_010 Hb_133702_010 Hb_001504_030--Hb_133702_010 Hb_001314_080 Hb_001314_080 Hb_001504_030--Hb_001314_080 Hb_001504_030--Hb_000721_030 Hb_001504_030--Hb_001102_020 Hb_005167_010 Hb_005167_010 Hb_000365_130--Hb_005167_010 Hb_007975_060 Hb_007975_060 Hb_000365_130--Hb_007975_060 Hb_006132_090 Hb_006132_090 Hb_000365_130--Hb_006132_090 Hb_003119_060 Hb_003119_060 Hb_000365_130--Hb_003119_060 Hb_004965_110 Hb_004965_110 Hb_000365_130--Hb_004965_110 Hb_001250_070--Hb_000721_030 Hb_001250_070--Hb_000365_130 Hb_003411_090 Hb_003411_090 Hb_001250_070--Hb_003411_090 Hb_001250_070--Hb_001504_030 Hb_001022_030 Hb_001022_030 Hb_001250_070--Hb_001022_030 Hb_000721_030--Hb_133702_010 Hb_004452_120 Hb_004452_120 Hb_000721_030--Hb_004452_120 Hb_005800_030 Hb_005800_030 Hb_000721_030--Hb_005800_030 Hb_001946_390 Hb_001946_390 Hb_000721_030--Hb_001946_390 Hb_012573_050 Hb_012573_050 Hb_000721_030--Hb_012573_050 Hb_001102_020--Hb_000721_030 Hb_001102_020--Hb_001250_070 Hb_000244_180 Hb_000244_180 Hb_001102_020--Hb_000244_180 Hb_003728_100 Hb_003728_100 Hb_001102_020--Hb_003728_100 Hb_000072_300 Hb_000072_300 Hb_000359_290--Hb_000072_300 Hb_000796_150 Hb_000796_150 Hb_000359_290--Hb_000796_150 Hb_000140_340 Hb_000140_340 Hb_000359_290--Hb_000140_340 Hb_001087_030 Hb_001087_030 Hb_000359_290--Hb_001087_030 Hb_004754_050 Hb_004754_050 Hb_000359_290--Hb_004754_050 Hb_011310_110 Hb_011310_110 Hb_000359_290--Hb_011310_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.5401 17.9737 98.0614 124.241 36.2668 46.2752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.4961 54.5274 40.3149 21.3075 91.7393

CAGE analysis