Hb_001250_070

Information

Type -
Description -
Location Contig1250: 56019-60854
Sequence    

Annotation

kegg
ID rcu:RCOM_0529250
description ATP-citrate synthase, putative (EC:6.2.1.5)
nr
ID XP_002525398.1
description ATP-citrate synthase, putative [Ricinus communis]
swissprot
ID Q9SGY2
description ATP-citrate synthase alpha chain protein 1 OS=Arabidopsis thaliana GN=ACLA-1 PE=1 SV=1
trembl
ID B9SHC9
description ATP-citrate synthase, putative OS=Ricinus communis GN=RCOM_0529250 PE=4 SV=1
Gene Ontology
ID GO:0004775
description atp-citrate synthase alpha chain protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07638: 56446-60789 , PASA_asmbl_07639: 56150-58457
cDNA
(Sanger)
(ID:Location)		 028_L22.ab1: 56453-58502

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001250_070 0.0 - - ATP-citrate synthase, putative [Ricinus communis]
2 Hb_003935_060 0.1014615538 - - PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Jatropha curcas]
3 Hb_000721_030 0.1033303491 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase mevalonate diphosphate decarboxylase [Hevea brasiliensis]
4 Hb_000365_130 0.1036479388 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
5 Hb_003411_090 0.1057099866 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
6 Hb_001504_030 0.1096793501 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
7 Hb_001022_030 0.1108891205 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
8 Hb_000796_150 0.112058268 - - PREDICTED: uncharacterized protein LOC105136996 isoform X1 [Populus euphratica]
9 Hb_004452_120 0.1168653858 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
10 Hb_048093_010 0.1171571126 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
11 Hb_001946_390 0.1198079215 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
12 Hb_156850_100 0.1198251488 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
13 Hb_000317_260 0.1223889608 - - unknown [Populus trichocarpa]
14 Hb_003266_030 0.1227356154 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
15 Hb_000539_050 0.1236869054 - - bile acid:sodium symporter, putative [Ricinus communis]
16 Hb_001882_010 0.1243007375 - - -
17 Hb_011671_260 0.1252250471 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
18 Hb_133702_010 0.1257591398 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_004951_060 0.126745764 - - PREDICTED: uncharacterized protein LOC105634399 [Jatropha curcas]
20 Hb_001102_020 0.1292516786 - - solanesyl diphosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_001250_070 Hb_001250_070 Hb_003935_060 Hb_003935_060 Hb_001250_070--Hb_003935_060 Hb_000721_030 Hb_000721_030 Hb_001250_070--Hb_000721_030 Hb_000365_130 Hb_000365_130 Hb_001250_070--Hb_000365_130 Hb_003411_090 Hb_003411_090 Hb_001250_070--Hb_003411_090 Hb_001504_030 Hb_001504_030 Hb_001250_070--Hb_001504_030 Hb_001022_030 Hb_001022_030 Hb_001250_070--Hb_001022_030 Hb_003935_060--Hb_001504_030 Hb_003935_060--Hb_000365_130 Hb_003935_060--Hb_000721_030 Hb_001102_020 Hb_001102_020 Hb_003935_060--Hb_001102_020 Hb_000359_290 Hb_000359_290 Hb_003935_060--Hb_000359_290 Hb_133702_010 Hb_133702_010 Hb_000721_030--Hb_133702_010 Hb_004452_120 Hb_004452_120 Hb_000721_030--Hb_004452_120 Hb_005800_030 Hb_005800_030 Hb_000721_030--Hb_005800_030 Hb_001946_390 Hb_001946_390 Hb_000721_030--Hb_001946_390 Hb_012573_050 Hb_012573_050 Hb_000721_030--Hb_012573_050 Hb_000721_030--Hb_001504_030 Hb_005167_010 Hb_005167_010 Hb_000365_130--Hb_005167_010 Hb_007975_060 Hb_007975_060 Hb_000365_130--Hb_007975_060 Hb_006132_090 Hb_006132_090 Hb_000365_130--Hb_006132_090 Hb_003119_060 Hb_003119_060 Hb_000365_130--Hb_003119_060 Hb_004965_110 Hb_004965_110 Hb_000365_130--Hb_004965_110 Hb_000317_260 Hb_000317_260 Hb_003411_090--Hb_000317_260 Hb_003266_030 Hb_003266_030 Hb_003411_090--Hb_003266_030 Hb_000167_110 Hb_000167_110 Hb_003411_090--Hb_000167_110 Hb_004951_060 Hb_004951_060 Hb_003411_090--Hb_004951_060 Hb_011671_260 Hb_011671_260 Hb_003411_090--Hb_011671_260 Hb_003411_090--Hb_004452_120 Hb_048093_010 Hb_048093_010 Hb_001504_030--Hb_048093_010 Hb_000189_480 Hb_000189_480 Hb_001504_030--Hb_000189_480 Hb_001504_030--Hb_133702_010 Hb_001314_080 Hb_001314_080 Hb_001504_030--Hb_001314_080 Hb_001504_030--Hb_001102_020 Hb_002874_180 Hb_002874_180 Hb_001022_030--Hb_002874_180 Hb_156850_100 Hb_156850_100 Hb_001022_030--Hb_156850_100 Hb_003728_100 Hb_003728_100 Hb_001022_030--Hb_003728_100 Hb_000539_050 Hb_000539_050 Hb_001022_030--Hb_000539_050 Hb_005539_010 Hb_005539_010 Hb_001022_030--Hb_005539_010 Hb_009225_020 Hb_009225_020 Hb_001022_030--Hb_009225_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0257 7.87773 36.7961 39.3763 10.6638 9.84588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.3282 15.928 11.1187 12.9729 30.9908

CAGE analysis