Hb_003411_090

Information

Type rubber biosynthesis
Description Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex
Location Contig3411: 125220-134842
Sequence    

Annotation

kegg
ID rcu:RCOM_0352880
description Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative (EC:2.3.1.168)
nr
ID XP_002529121.1
description Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9SQI8
description Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic OS=Arabidopsis thaliana GN=LTA2 PE=2 SV=1
trembl
ID B9ST02
description Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative OS=Ricinus communis GN=RCOM_0352880 PE=3 SV=1
Gene Ontology
ID GO:0016746
description dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35662: 125221-134496 , PASA_asmbl_35663: 129630-134663
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003411_090 0.0 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
2 Hb_000317_260 0.0608133235 - - unknown [Populus trichocarpa]
3 Hb_003266_030 0.0730467991 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
4 Hb_000167_110 0.0753311616 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
5 Hb_004951_060 0.0921802389 - - PREDICTED: uncharacterized protein LOC105634399 [Jatropha curcas]
6 Hb_011671_260 0.0924677173 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
7 Hb_004452_120 0.0935223647 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
8 Hb_007904_230 0.0949949058 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
9 Hb_004440_060 0.0969324604 - - aldose 1-epimerase, putative [Ricinus communis]
10 Hb_001946_390 0.0973539451 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
11 Hb_001900_140 0.1003186616 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
12 Hb_000364_050 0.1019479058 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
13 Hb_000684_030 0.1022121363 - - syntaxin, putative [Ricinus communis]
14 Hb_001277_100 0.1044694133 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
15 Hb_001250_070 0.1057099866 - - ATP-citrate synthase, putative [Ricinus communis]
16 Hb_000174_260 0.1062903396 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
17 Hb_003747_230 0.1067419414 - - PREDICTED: uncharacterized protein LOC105630239 isoform X1 [Jatropha curcas]
18 Hb_004965_110 0.1081045657 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
19 Hb_000394_180 0.1081109301 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]
20 Hb_000926_080 0.1083322154 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003411_090 Hb_003411_090 Hb_000317_260 Hb_000317_260 Hb_003411_090--Hb_000317_260 Hb_003266_030 Hb_003266_030 Hb_003411_090--Hb_003266_030 Hb_000167_110 Hb_000167_110 Hb_003411_090--Hb_000167_110 Hb_004951_060 Hb_004951_060 Hb_003411_090--Hb_004951_060 Hb_011671_260 Hb_011671_260 Hb_003411_090--Hb_011671_260 Hb_004452_120 Hb_004452_120 Hb_003411_090--Hb_004452_120 Hb_004440_060 Hb_004440_060 Hb_000317_260--Hb_004440_060 Hb_000317_260--Hb_004951_060 Hb_007904_230 Hb_007904_230 Hb_000317_260--Hb_007904_230 Hb_000317_260--Hb_003266_030 Hb_001369_790 Hb_001369_790 Hb_000317_260--Hb_001369_790 Hb_003266_030--Hb_007904_230 Hb_003266_030--Hb_011671_260 Hb_004965_110 Hb_004965_110 Hb_003266_030--Hb_004965_110 Hb_000086_080 Hb_000086_080 Hb_003266_030--Hb_000086_080 Hb_000926_080 Hb_000926_080 Hb_003266_030--Hb_000926_080 Hb_000167_110--Hb_011671_260 Hb_008705_020 Hb_008705_020 Hb_000167_110--Hb_008705_020 Hb_000107_430 Hb_000107_430 Hb_000167_110--Hb_000107_430 Hb_003053_110 Hb_003053_110 Hb_000167_110--Hb_003053_110 Hb_000167_110--Hb_003266_030 Hb_062226_060 Hb_062226_060 Hb_004951_060--Hb_062226_060 Hb_000394_180 Hb_000394_180 Hb_004951_060--Hb_000394_180 Hb_001662_130 Hb_001662_130 Hb_004951_060--Hb_001662_130 Hb_007192_030 Hb_007192_030 Hb_004951_060--Hb_007192_030 Hb_006846_150 Hb_006846_150 Hb_004951_060--Hb_006846_150 Hb_002631_240 Hb_002631_240 Hb_011671_260--Hb_002631_240 Hb_073973_090 Hb_073973_090 Hb_011671_260--Hb_073973_090 Hb_006907_060 Hb_006907_060 Hb_011671_260--Hb_006907_060 Hb_011671_260--Hb_004965_110 Hb_012150_030 Hb_012150_030 Hb_004452_120--Hb_012150_030 Hb_010863_050 Hb_010863_050 Hb_004452_120--Hb_010863_050 Hb_133702_010 Hb_133702_010 Hb_004452_120--Hb_133702_010 Hb_000364_050 Hb_000364_050 Hb_004452_120--Hb_000364_050 Hb_000061_180 Hb_000061_180 Hb_004452_120--Hb_000061_180 Hb_035273_020 Hb_035273_020 Hb_004452_120--Hb_035273_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.6586 4.30558 19.5147 13.9867 4.15811 4.15086
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3358 10.1789 9.71576 8.55275 19.4055

CAGE analysis