Hb_011671_260

Information

Type -
Description -
Location Contig11671: 236158-240221
Sequence    

Annotation

kegg
ID pop:POPTR_0001s11820g
description POPTRDRAFT_1066420; hypothetical protein
nr
ID XP_012090501.1
description PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
swissprot
ID P53118
description Putative lipase ROG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ROG1 PE=1 SV=1
trembl
ID A0A067JR29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26296 PE=4 SV=1
Gene Ontology
ID GO:0016787
description lipase yor059c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05162: 236252-240189 , PASA_asmbl_05164: 239213-240095
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_260 0.0 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
2 Hb_003266_030 0.0601472589 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
3 Hb_002631_240 0.0618764207 - - JHL17M24.3 [Jatropha curcas]
4 Hb_073973_090 0.0645107309 - - Aminotransferase ybdL, putative [Ricinus communis]
5 Hb_000167_110 0.0675589732 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
6 Hb_006907_060 0.0762113162 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
7 Hb_004965_110 0.0767036324 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
8 Hb_000086_080 0.0767476049 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007904_230 0.0812807225 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
10 Hb_001675_140 0.0818283846 - - hypothetical protein L484_026216 [Morus notabilis]
11 Hb_000926_080 0.0835386371 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
12 Hb_000270_480 0.0836741208 - - Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]
13 Hb_001900_140 0.0861524873 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
14 Hb_000023_360 0.086218667 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
15 Hb_156850_100 0.0868769751 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
16 Hb_000080_130 0.0890708729 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
17 Hb_003053_110 0.0892302416 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
18 Hb_000107_430 0.090275366 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
19 Hb_000128_060 0.0906096007 - - PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic isoform X1 [Vitis vinifera]
20 Hb_001277_100 0.0907457898 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]

Gene co-expression network

sample Hb_011671_260 Hb_011671_260 Hb_003266_030 Hb_003266_030 Hb_011671_260--Hb_003266_030 Hb_002631_240 Hb_002631_240 Hb_011671_260--Hb_002631_240 Hb_073973_090 Hb_073973_090 Hb_011671_260--Hb_073973_090 Hb_000167_110 Hb_000167_110 Hb_011671_260--Hb_000167_110 Hb_006907_060 Hb_006907_060 Hb_011671_260--Hb_006907_060 Hb_004965_110 Hb_004965_110 Hb_011671_260--Hb_004965_110 Hb_007904_230 Hb_007904_230 Hb_003266_030--Hb_007904_230 Hb_003266_030--Hb_004965_110 Hb_000086_080 Hb_000086_080 Hb_003266_030--Hb_000086_080 Hb_003411_090 Hb_003411_090 Hb_003266_030--Hb_003411_090 Hb_000926_080 Hb_000926_080 Hb_003266_030--Hb_000926_080 Hb_002631_240--Hb_006907_060 Hb_002631_240--Hb_073973_090 Hb_001703_040 Hb_001703_040 Hb_002631_240--Hb_001703_040 Hb_000537_100 Hb_000537_100 Hb_002631_240--Hb_000537_100 Hb_005946_040 Hb_005946_040 Hb_002631_240--Hb_005946_040 Hb_000035_090 Hb_000035_090 Hb_073973_090--Hb_000035_090 Hb_000023_360 Hb_000023_360 Hb_073973_090--Hb_000023_360 Hb_049575_010 Hb_049575_010 Hb_073973_090--Hb_049575_010 Hb_073973_090--Hb_000537_100 Hb_008705_020 Hb_008705_020 Hb_000167_110--Hb_008705_020 Hb_000107_430 Hb_000107_430 Hb_000167_110--Hb_000107_430 Hb_003053_110 Hb_003053_110 Hb_000167_110--Hb_003053_110 Hb_000167_110--Hb_003411_090 Hb_000167_110--Hb_003266_030 Hb_000941_100 Hb_000941_100 Hb_006907_060--Hb_000941_100 Hb_006907_060--Hb_003053_110 Hb_006907_060--Hb_073973_090 Hb_006907_060--Hb_008705_020 Hb_001195_770 Hb_001195_770 Hb_006907_060--Hb_001195_770 Hb_004965_110--Hb_007904_230 Hb_006132_090 Hb_006132_090 Hb_004965_110--Hb_006132_090 Hb_004965_110--Hb_000926_080 Hb_001900_140 Hb_001900_140 Hb_004965_110--Hb_001900_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.43769 6.78246 17.1115 14.5054 4.67374 4.47542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.27663 8.68965 8.62533 6.03356 16.2873

CAGE analysis