Hb_000926_080

Information

Type -
Description -
Location Contig926: 90259-93586
Sequence    

Annotation

kegg
ID rcu:RCOM_1287170
description hypothetical protein
nr
ID XP_012065154.1
description PREDICTED: paraspeckle component 1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L601
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20842 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62657: 90274-93554
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_080 0.0 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
2 Hb_000200_300 0.063141156 - - PREDICTED: uncharacterized protein LOC105636926 [Jatropha curcas]
3 Hb_003266_030 0.0748541747 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
4 Hb_000086_080 0.0784359197 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004965_110 0.0786465191 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
6 Hb_006907_060 0.0793266723 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
7 Hb_027506_040 0.0802219893 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
8 Hb_001900_140 0.0822490968 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
9 Hb_011671_260 0.0835386371 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
10 Hb_007558_090 0.0860900985 - - PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_002631_240 0.0869815604 - - JHL17M24.3 [Jatropha curcas]
12 Hb_005946_040 0.0882044853 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
13 Hb_001882_010 0.0886554278 - - -
14 Hb_007904_230 0.0908357487 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
15 Hb_049575_010 0.0909797649 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
16 Hb_014497_100 0.0916377818 - - PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
17 Hb_156850_100 0.0928105477 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
18 Hb_073973_090 0.0945016425 - - Aminotransferase ybdL, putative [Ricinus communis]
19 Hb_000537_100 0.0947159 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
20 Hb_007741_110 0.0952102969 - - -

Gene co-expression network

sample Hb_000926_080 Hb_000926_080 Hb_000200_300 Hb_000200_300 Hb_000926_080--Hb_000200_300 Hb_003266_030 Hb_003266_030 Hb_000926_080--Hb_003266_030 Hb_000086_080 Hb_000086_080 Hb_000926_080--Hb_000086_080 Hb_004965_110 Hb_004965_110 Hb_000926_080--Hb_004965_110 Hb_006907_060 Hb_006907_060 Hb_000926_080--Hb_006907_060 Hb_027506_040 Hb_027506_040 Hb_000926_080--Hb_027506_040 Hb_000057_110 Hb_000057_110 Hb_000200_300--Hb_000057_110 Hb_000200_300--Hb_003266_030 Hb_000200_300--Hb_004965_110 Hb_000684_030 Hb_000684_030 Hb_000200_300--Hb_000684_030 Hb_000200_300--Hb_000086_080 Hb_007904_230 Hb_007904_230 Hb_003266_030--Hb_007904_230 Hb_011671_260 Hb_011671_260 Hb_003266_030--Hb_011671_260 Hb_003266_030--Hb_004965_110 Hb_003266_030--Hb_000086_080 Hb_003411_090 Hb_003411_090 Hb_003266_030--Hb_003411_090 Hb_007192_030 Hb_007192_030 Hb_000086_080--Hb_007192_030 Hb_073973_090 Hb_073973_090 Hb_000086_080--Hb_073973_090 Hb_000086_080--Hb_011671_260 Hb_000023_360 Hb_000023_360 Hb_000086_080--Hb_000023_360 Hb_003053_110 Hb_003053_110 Hb_000086_080--Hb_003053_110 Hb_004965_110--Hb_007904_230 Hb_004965_110--Hb_011671_260 Hb_006132_090 Hb_006132_090 Hb_004965_110--Hb_006132_090 Hb_001900_140 Hb_001900_140 Hb_004965_110--Hb_001900_140 Hb_002631_240 Hb_002631_240 Hb_006907_060--Hb_002631_240 Hb_000941_100 Hb_000941_100 Hb_006907_060--Hb_000941_100 Hb_006907_060--Hb_003053_110 Hb_006907_060--Hb_073973_090 Hb_008705_020 Hb_008705_020 Hb_006907_060--Hb_008705_020 Hb_001195_770 Hb_001195_770 Hb_006907_060--Hb_001195_770 Hb_027506_040--Hb_000200_300 Hb_027506_040--Hb_011671_260 Hb_000398_170 Hb_000398_170 Hb_027506_040--Hb_000398_170 Hb_003602_060 Hb_003602_060 Hb_027506_040--Hb_003602_060 Hb_027506_040--Hb_000684_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.81325 5.86769 27.1259 15.7983 4.70117 5.47295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.56698 13.8542 7.95963 7.23897 19.9211

CAGE analysis