Hb_000684_030

Information

Type -
Description -
Location Contig684: 59167-61570
Sequence    

Annotation

kegg
ID rcu:RCOM_1356980
description syntaxin, putative
nr
ID XP_002519551.1
description syntaxin, putative [Ricinus communis]
swissprot
ID Q9SF29
description Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1
trembl
ID B9S0N2
description Syntaxin, putative OS=Ricinus communis GN=RCOM_1356980 PE=4 SV=1
Gene Ontology
ID GO:0005783
description syntaxin-71-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53948: 54691-59335 , PASA_asmbl_53950: 59828-59976 , PASA_asmbl_53951: 60829-61499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_030 0.0 - - syntaxin, putative [Ricinus communis]
2 Hb_001221_030 0.0659153447 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
3 Hb_000057_110 0.076094111 - - PREDICTED: kinesin-13A [Jatropha curcas]
4 Hb_000174_260 0.0784204517 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
5 Hb_003266_030 0.0801196972 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
6 Hb_000200_300 0.0848688452 - - PREDICTED: uncharacterized protein LOC105636926 [Jatropha curcas]
7 Hb_003605_020 0.0902370991 - - exocyst complex component sec6, putative [Ricinus communis]
8 Hb_027506_040 0.0986297067 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
9 Hb_005754_040 0.0998488096 - - PREDICTED: uncharacterized protein LOC105636678 isoform X2 [Jatropha curcas]
10 Hb_002687_120 0.1003123532 - - PREDICTED: lipoyl synthase, chloroplastic [Jatropha curcas]
11 Hb_000181_350 0.100517145 - - PREDICTED: uncharacterized protein LOC105111090 [Populus euphratica]
12 Hb_002193_060 0.1018548623 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
13 Hb_003411_090 0.1022121363 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
14 Hb_000330_090 0.1032503708 - - ornithine carbamoyltransferase, putative [Ricinus communis]
15 Hb_001946_390 0.1046804157 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
16 Hb_007441_080 0.1053050607 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
17 Hb_004965_110 0.1063120736 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
18 Hb_002392_010 0.1072714794 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
19 Hb_005276_040 0.1077503176 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]
20 Hb_001663_040 0.1082847942 - - hypothetical protein B456_007G162000 [Gossypium raimondii]

Gene co-expression network

sample Hb_000684_030 Hb_000684_030 Hb_001221_030 Hb_001221_030 Hb_000684_030--Hb_001221_030 Hb_000057_110 Hb_000057_110 Hb_000684_030--Hb_000057_110 Hb_000174_260 Hb_000174_260 Hb_000684_030--Hb_000174_260 Hb_003266_030 Hb_003266_030 Hb_000684_030--Hb_003266_030 Hb_000200_300 Hb_000200_300 Hb_000684_030--Hb_000200_300 Hb_003605_020 Hb_003605_020 Hb_000684_030--Hb_003605_020 Hb_001221_030--Hb_000174_260 Hb_005276_040 Hb_005276_040 Hb_001221_030--Hb_005276_040 Hb_001221_030--Hb_003605_020 Hb_001221_030--Hb_000200_300 Hb_000330_090 Hb_000330_090 Hb_001221_030--Hb_000330_090 Hb_000057_110--Hb_000200_300 Hb_000364_170 Hb_000364_170 Hb_000057_110--Hb_000364_170 Hb_000012_080 Hb_000012_080 Hb_000057_110--Hb_000012_080 Hb_006829_060 Hb_006829_060 Hb_000057_110--Hb_006829_060 Hb_008725_270 Hb_008725_270 Hb_000057_110--Hb_008725_270 Hb_000174_260--Hb_005276_040 Hb_000174_260--Hb_003605_020 Hb_000174_260--Hb_000330_090 Hb_001269_130 Hb_001269_130 Hb_000174_260--Hb_001269_130 Hb_007904_230 Hb_007904_230 Hb_003266_030--Hb_007904_230 Hb_011671_260 Hb_011671_260 Hb_003266_030--Hb_011671_260 Hb_004965_110 Hb_004965_110 Hb_003266_030--Hb_004965_110 Hb_000086_080 Hb_000086_080 Hb_003266_030--Hb_000086_080 Hb_003411_090 Hb_003411_090 Hb_003266_030--Hb_003411_090 Hb_000926_080 Hb_000926_080 Hb_003266_030--Hb_000926_080 Hb_000200_300--Hb_000926_080 Hb_000200_300--Hb_003266_030 Hb_000200_300--Hb_004965_110 Hb_000200_300--Hb_000086_080 Hb_065968_010 Hb_065968_010 Hb_003605_020--Hb_065968_010 Hb_000395_280 Hb_000395_280 Hb_003605_020--Hb_000395_280 Hb_001957_010 Hb_001957_010 Hb_003605_020--Hb_001957_010 Hb_003605_020--Hb_001269_130 Hb_019654_020 Hb_019654_020 Hb_003605_020--Hb_019654_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.36216 2.5482 14.8574 13.0566 1.88091 3.54228
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.47653 6.6325 6.55543 7.67599 10.4088

CAGE analysis