Hb_001269_130

Information

Type -
Description -
Location Contig1269: 167494-177996
Sequence    

Annotation

kegg
ID rcu:RCOM_0471040
description plant poly(A)+ RNA export protein, putative
nr
ID XP_002527320.1
description plant poly(A)+ RNA export protein, putative [Ricinus communis]
swissprot
ID Q38942
description Protein RAE1 OS=Arabidopsis thaliana GN=RAE1 PE=1 SV=2
trembl
ID B9SMV1
description Plant poly(A)+ RNA export protein, putative OS=Ricinus communis GN=RCOM_0471040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08159: 167396-178060 , PASA_asmbl_08160: 169568-169821
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_130 0.0 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
2 Hb_000663_060 0.0600866493 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
3 Hb_000080_130 0.0678781067 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
4 Hb_000364_050 0.0690997264 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
5 Hb_003098_070 0.0739656215 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
6 Hb_006824_010 0.0749033702 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
7 Hb_005946_150 0.0759066094 - - PREDICTED: DNA mismatch repair protein MSH7 [Jatropha curcas]
8 Hb_159809_070 0.0762349539 - - phospholipase A-2-activating protein, putative [Ricinus communis]
9 Hb_065968_010 0.0772319322 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
10 Hb_008304_020 0.0780570361 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
11 Hb_012733_040 0.079217055 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
12 Hb_000330_090 0.0793116496 - - ornithine carbamoyltransferase, putative [Ricinus communis]
13 Hb_000078_140 0.0793426005 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
14 Hb_000398_060 0.0802592025 - - PREDICTED: survival of motor neuron-related-splicing factor 30 [Jatropha curcas]
15 Hb_000174_260 0.0807049426 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
16 Hb_000841_050 0.0816949876 - - hypothetical protein L484_019972 [Morus notabilis]
17 Hb_003605_020 0.0828582319 - - exocyst complex component sec6, putative [Ricinus communis]
18 Hb_001828_180 0.0838178273 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
19 Hb_049575_010 0.0862818438 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
20 Hb_000363_190 0.0868473288 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001269_130 Hb_001269_130 Hb_000663_060 Hb_000663_060 Hb_001269_130--Hb_000663_060 Hb_000080_130 Hb_000080_130 Hb_001269_130--Hb_000080_130 Hb_000364_050 Hb_000364_050 Hb_001269_130--Hb_000364_050 Hb_003098_070 Hb_003098_070 Hb_001269_130--Hb_003098_070 Hb_006824_010 Hb_006824_010 Hb_001269_130--Hb_006824_010 Hb_005946_150 Hb_005946_150 Hb_001269_130--Hb_005946_150 Hb_001828_180 Hb_001828_180 Hb_000663_060--Hb_001828_180 Hb_000778_010 Hb_000778_010 Hb_000663_060--Hb_000778_010 Hb_000363_190 Hb_000363_190 Hb_000663_060--Hb_000363_190 Hb_023001_040 Hb_023001_040 Hb_000663_060--Hb_023001_040 Hb_163175_010 Hb_163175_010 Hb_000663_060--Hb_163175_010 Hb_004545_110 Hb_004545_110 Hb_000080_130--Hb_004545_110 Hb_015675_040 Hb_015675_040 Hb_000080_130--Hb_015675_040 Hb_133702_010 Hb_133702_010 Hb_000080_130--Hb_133702_010 Hb_005167_010 Hb_005167_010 Hb_000080_130--Hb_005167_010 Hb_000080_130--Hb_000663_060 Hb_007904_230 Hb_007904_230 Hb_000364_050--Hb_007904_230 Hb_004452_120 Hb_004452_120 Hb_000364_050--Hb_004452_120 Hb_012733_040 Hb_012733_040 Hb_000364_050--Hb_012733_040 Hb_006059_030 Hb_006059_030 Hb_000364_050--Hb_006059_030 Hb_010863_050 Hb_010863_050 Hb_000364_050--Hb_010863_050 Hb_000139_080 Hb_000139_080 Hb_003098_070--Hb_000139_080 Hb_000365_230 Hb_000365_230 Hb_003098_070--Hb_000365_230 Hb_006189_020 Hb_006189_020 Hb_003098_070--Hb_006189_020 Hb_033312_040 Hb_033312_040 Hb_003098_070--Hb_033312_040 Hb_000476_060 Hb_000476_060 Hb_003098_070--Hb_000476_060 Hb_000078_140 Hb_000078_140 Hb_003098_070--Hb_000078_140 Hb_002006_150 Hb_002006_150 Hb_006824_010--Hb_002006_150 Hb_007904_300 Hb_007904_300 Hb_006824_010--Hb_007904_300 Hb_006824_010--Hb_000139_080 Hb_006824_010--Hb_006189_020 Hb_006824_010--Hb_003098_070 Hb_008304_020 Hb_008304_020 Hb_005946_150--Hb_008304_020 Hb_005946_150--Hb_006824_010 Hb_005946_150--Hb_002006_150 Hb_000330_090 Hb_000330_090 Hb_005946_150--Hb_000330_090 Hb_001277_030 Hb_001277_030 Hb_005946_150--Hb_001277_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.73891 5.6208 12.676 11.3868 3.95272 5.1866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.66912 8.69745 6.73281 11.1658 10.7095

CAGE analysis