Hb_002006_150

Information

Type -
Description -
Location Contig2006: 125219-135285
Sequence    

Annotation

kegg
ID rcu:RCOM_1503390
description copine, putative
nr
ID XP_002511086.1
description copine, putative [Ricinus communis]
swissprot
ID Q941L3
description Protein BONZAI 1 OS=Arabidopsis thaliana GN=BON1 PE=1 SV=2
trembl
ID B9RA61
description Copine, putative OS=Ricinus communis GN=RCOM_1503390 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein bonzai 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20345: 124949-134580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002006_150 0.0 - - copine, putative [Ricinus communis]
2 Hb_006824_010 0.0586914749 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
3 Hb_000139_080 0.0668278567 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
4 Hb_000078_140 0.0791252874 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
5 Hb_015099_030 0.0791500656 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
6 Hb_002675_250 0.0803919366 - - aspartate aminotransferase, putative [Ricinus communis]
7 Hb_000101_390 0.0823284288 - - PREDICTED: mucin-5B [Jatropha curcas]
8 Hb_006189_020 0.0824807251 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
9 Hb_007413_010 0.0827880662 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
10 Hb_006970_020 0.083534284 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
11 Hb_007904_300 0.0837712626 - - copine, putative [Ricinus communis]
12 Hb_003098_070 0.0846783154 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
13 Hb_001195_400 0.0851156986 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
14 Hb_004957_030 0.0852132785 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
15 Hb_001141_240 0.0854397036 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
16 Hb_004333_040 0.0858382316 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
17 Hb_000016_210 0.0862220125 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
18 Hb_010863_050 0.08648687 - - OTU domain-containing protein 6B, putative [Ricinus communis]
19 Hb_002684_020 0.0866760151 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
20 Hb_003581_200 0.0867254252 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]

Gene co-expression network

sample Hb_002006_150 Hb_002006_150 Hb_006824_010 Hb_006824_010 Hb_002006_150--Hb_006824_010 Hb_000139_080 Hb_000139_080 Hb_002006_150--Hb_000139_080 Hb_000078_140 Hb_000078_140 Hb_002006_150--Hb_000078_140 Hb_015099_030 Hb_015099_030 Hb_002006_150--Hb_015099_030 Hb_002675_250 Hb_002675_250 Hb_002006_150--Hb_002675_250 Hb_000101_390 Hb_000101_390 Hb_002006_150--Hb_000101_390 Hb_007904_300 Hb_007904_300 Hb_006824_010--Hb_007904_300 Hb_006824_010--Hb_000139_080 Hb_006189_020 Hb_006189_020 Hb_006824_010--Hb_006189_020 Hb_003098_070 Hb_003098_070 Hb_006824_010--Hb_003098_070 Hb_001269_130 Hb_001269_130 Hb_006824_010--Hb_001269_130 Hb_000139_080--Hb_003098_070 Hb_033312_040 Hb_033312_040 Hb_000139_080--Hb_033312_040 Hb_000139_080--Hb_000078_140 Hb_000139_080--Hb_006189_020 Hb_003626_070 Hb_003626_070 Hb_000139_080--Hb_003626_070 Hb_000169_020 Hb_000169_020 Hb_000139_080--Hb_000169_020 Hb_079526_040 Hb_079526_040 Hb_000078_140--Hb_079526_040 Hb_074197_040 Hb_074197_040 Hb_000078_140--Hb_074197_040 Hb_032202_220 Hb_032202_220 Hb_000078_140--Hb_032202_220 Hb_000078_140--Hb_003098_070 Hb_001195_400 Hb_001195_400 Hb_000078_140--Hb_001195_400 Hb_004957_030 Hb_004957_030 Hb_015099_030--Hb_004957_030 Hb_007545_010 Hb_007545_010 Hb_015099_030--Hb_007545_010 Hb_002774_190 Hb_002774_190 Hb_015099_030--Hb_002774_190 Hb_012733_040 Hb_012733_040 Hb_015099_030--Hb_012733_040 Hb_002883_030 Hb_002883_030 Hb_015099_030--Hb_002883_030 Hb_000529_180 Hb_000529_180 Hb_002675_250--Hb_000529_180 Hb_010863_050 Hb_010863_050 Hb_002675_250--Hb_010863_050 Hb_002684_020 Hb_002684_020 Hb_002675_250--Hb_002684_020 Hb_004324_360 Hb_004324_360 Hb_002675_250--Hb_004324_360 Hb_001488_020 Hb_001488_020 Hb_002675_250--Hb_001488_020 Hb_001504_060 Hb_001504_060 Hb_000101_390--Hb_001504_060 Hb_002445_030 Hb_002445_030 Hb_000101_390--Hb_002445_030 Hb_008206_080 Hb_008206_080 Hb_000101_390--Hb_008206_080 Hb_000101_390--Hb_006824_010 Hb_000101_390--Hb_002684_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.22486 5.97796 10.711 9.41993 2.94849 5.13595
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.45848 3.61113 4.9007 8.82361 11.0792

CAGE analysis