Hb_002445_030

Information

Type -
Description -
Location Contig2445: 59325-66612
Sequence    

Annotation

kegg
ID rcu:RCOM_1279300
description hypothetical protein
nr
ID KDP34308.1
description hypothetical protein JCGZ_12656 [Jatropha curcas]
swissprot
ID Q9FIQ1
description Ubiquitin carboxyl-terminal hydrolase 21 OS=Arabidopsis thaliana GN=UBP21 PE=2 SV=1
trembl
ID A0A067KH48
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_12656 PE=3 SV=1
Gene Ontology
ID GO:0036459
description ubiquitin-specific protease 21 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25498: 59235-63035 , PASA_asmbl_25499: 63058-65429 , PASA_asmbl_25500: 63525-63699
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002445_030 0.0 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
2 Hb_000173_130 0.0723441493 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
3 Hb_006438_020 0.0727336309 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
4 Hb_013726_050 0.0734457679 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
5 Hb_008289_040 0.0747094404 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
6 Hb_002552_040 0.0763846772 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
7 Hb_002687_180 0.0812622743 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
8 Hb_000101_390 0.0817563744 - - PREDICTED: mucin-5B [Jatropha curcas]
9 Hb_000815_300 0.0834692581 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
10 Hb_001141_240 0.085087651 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
11 Hb_000510_170 0.0859300167 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
12 Hb_005741_040 0.0864590006 - - PREDICTED: probable receptor-like protein kinase At1g49730 [Jatropha curcas]
13 Hb_000243_260 0.0878374289 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
14 Hb_027760_060 0.0881534235 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
15 Hb_000666_010 0.0896622484 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006970_020 0.0897303796 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
17 Hb_007904_300 0.0905842448 - - copine, putative [Ricinus communis]
18 Hb_001159_060 0.0907394206 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
19 Hb_001117_110 0.0914734117 - - PREDICTED: dynamin-2A [Jatropha curcas]
20 Hb_002042_050 0.0916683112 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002445_030 Hb_002445_030 Hb_000173_130 Hb_000173_130 Hb_002445_030--Hb_000173_130 Hb_006438_020 Hb_006438_020 Hb_002445_030--Hb_006438_020 Hb_013726_050 Hb_013726_050 Hb_002445_030--Hb_013726_050 Hb_008289_040 Hb_008289_040 Hb_002445_030--Hb_008289_040 Hb_002552_040 Hb_002552_040 Hb_002445_030--Hb_002552_040 Hb_002687_180 Hb_002687_180 Hb_002445_030--Hb_002687_180 Hb_000173_130--Hb_008289_040 Hb_000173_130--Hb_002552_040 Hb_000703_330 Hb_000703_330 Hb_000173_130--Hb_000703_330 Hb_000815_300 Hb_000815_300 Hb_000173_130--Hb_000815_300 Hb_016734_010 Hb_016734_010 Hb_000173_130--Hb_016734_010 Hb_012633_050 Hb_012633_050 Hb_006438_020--Hb_012633_050 Hb_006438_020--Hb_002687_180 Hb_011716_010 Hb_011716_010 Hb_006438_020--Hb_011716_010 Hb_021596_020 Hb_021596_020 Hb_006438_020--Hb_021596_020 Hb_061256_010 Hb_061256_010 Hb_006438_020--Hb_061256_010 Hb_002272_240 Hb_002272_240 Hb_013726_050--Hb_002272_240 Hb_002304_050 Hb_002304_050 Hb_013726_050--Hb_002304_050 Hb_005741_040 Hb_005741_040 Hb_013726_050--Hb_005741_040 Hb_013726_050--Hb_002687_180 Hb_116349_120 Hb_116349_120 Hb_013726_050--Hb_116349_120 Hb_021165_010 Hb_021165_010 Hb_008289_040--Hb_021165_010 Hb_016172_030 Hb_016172_030 Hb_008289_040--Hb_016172_030 Hb_065500_020 Hb_065500_020 Hb_008289_040--Hb_065500_020 Hb_000406_210 Hb_000406_210 Hb_008289_040--Hb_000406_210 Hb_008289_040--Hb_000703_330 Hb_002552_040--Hb_000815_300 Hb_002552_040--Hb_002687_180 Hb_004228_120 Hb_004228_120 Hb_002552_040--Hb_004228_120 Hb_001279_190 Hb_001279_190 Hb_002552_040--Hb_001279_190 Hb_065968_010 Hb_065968_010 Hb_002552_040--Hb_065968_010 Hb_006970_020 Hb_006970_020 Hb_002552_040--Hb_006970_020 Hb_002687_180--Hb_001279_190 Hb_002687_180--Hb_004228_120 Hb_001250_050 Hb_001250_050 Hb_002687_180--Hb_001250_050 Hb_002687_180--Hb_002304_050 Hb_002687_180--Hb_005741_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.770693 2.03901 3.01547 3.0199 0.665918 1.02442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.722712 0.965763 1.54098 2.22945 2.47522

CAGE analysis