Hb_021596_020

Information

Type -
Description -
Location Contig21596: 16482-21982
Sequence    

Annotation

kegg
ID pop:POPTR_0010s01860g
description POPTRDRAFT_768688; transcription activation domain-interacting family protein
nr
ID KDP40036.1
description hypothetical protein JCGZ_02034 [Jatropha curcas]
swissprot
ID Q767L8
description Mediator of DNA damage checkpoint protein 1 OS=Sus scrofa GN=MDC1 PE=3 SV=1
trembl
ID A0A067KUZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02034 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22342: 17330-18335
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021596_020 0.0 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
2 Hb_001504_010 0.0610650054 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
3 Hb_002684_020 0.0684904179 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
4 Hb_016448_010 0.0738181069 - - Protein MYG1, putative [Ricinus communis]
5 Hb_000748_090 0.0744782727 - - glucose inhibited division protein A, putative [Ricinus communis]
6 Hb_006438_020 0.0770037922 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
7 Hb_012633_050 0.0782985438 - - zinc finger protein, putative [Ricinus communis]
8 Hb_012438_030 0.0784953752 - - PREDICTED: protein sym-1 [Jatropha curcas]
9 Hb_000300_560 0.0800487641 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
10 Hb_000788_030 0.0807301814 - - PREDICTED: dynamin-2A [Jatropha curcas]
11 Hb_004531_150 0.0819821656 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
12 Hb_001703_040 0.0848355698 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
13 Hb_004324_360 0.084964007 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
14 Hb_001396_020 0.0857093141 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
15 Hb_000815_300 0.0862356944 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
16 Hb_001159_060 0.0872956083 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
17 Hb_000579_080 0.0887496356 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
18 Hb_000862_100 0.0893428913 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
19 Hb_003058_140 0.0893778195 - - conserved hypothetical protein [Ricinus communis]
20 Hb_160271_010 0.0895312165 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_021596_020 Hb_021596_020 Hb_001504_010 Hb_001504_010 Hb_021596_020--Hb_001504_010 Hb_002684_020 Hb_002684_020 Hb_021596_020--Hb_002684_020 Hb_016448_010 Hb_016448_010 Hb_021596_020--Hb_016448_010 Hb_000748_090 Hb_000748_090 Hb_021596_020--Hb_000748_090 Hb_006438_020 Hb_006438_020 Hb_021596_020--Hb_006438_020 Hb_012633_050 Hb_012633_050 Hb_021596_020--Hb_012633_050 Hb_007483_070 Hb_007483_070 Hb_001504_010--Hb_007483_070 Hb_000163_260 Hb_000163_260 Hb_001504_010--Hb_000163_260 Hb_000579_080 Hb_000579_080 Hb_001504_010--Hb_000579_080 Hb_008304_020 Hb_008304_020 Hb_001504_010--Hb_008304_020 Hb_000815_300 Hb_000815_300 Hb_001504_010--Hb_000815_300 Hb_004324_360 Hb_004324_360 Hb_002684_020--Hb_004324_360 Hb_006970_020 Hb_006970_020 Hb_002684_020--Hb_006970_020 Hb_000788_030 Hb_000788_030 Hb_002684_020--Hb_000788_030 Hb_002684_020--Hb_000815_300 Hb_012438_030 Hb_012438_030 Hb_002684_020--Hb_012438_030 Hb_003506_030 Hb_003506_030 Hb_016448_010--Hb_003506_030 Hb_016448_010--Hb_012438_030 Hb_016448_010--Hb_001504_010 Hb_000098_240 Hb_000098_240 Hb_016448_010--Hb_000098_240 Hb_026234_010 Hb_026234_010 Hb_016448_010--Hb_026234_010 Hb_007012_030 Hb_007012_030 Hb_000748_090--Hb_007012_030 Hb_002600_070 Hb_002600_070 Hb_000748_090--Hb_002600_070 Hb_068804_090 Hb_068804_090 Hb_000748_090--Hb_068804_090 Hb_000748_090--Hb_004324_360 Hb_000482_050 Hb_000482_050 Hb_000748_090--Hb_000482_050 Hb_006438_020--Hb_012633_050 Hb_002445_030 Hb_002445_030 Hb_006438_020--Hb_002445_030 Hb_002687_180 Hb_002687_180 Hb_006438_020--Hb_002687_180 Hb_011716_010 Hb_011716_010 Hb_006438_020--Hb_011716_010 Hb_061256_010 Hb_061256_010 Hb_006438_020--Hb_061256_010 Hb_012633_050--Hb_001504_010 Hb_012633_050--Hb_000579_080 Hb_000229_050 Hb_000229_050 Hb_012633_050--Hb_000229_050 Hb_008206_080 Hb_008206_080 Hb_012633_050--Hb_008206_080 Hb_172979_010 Hb_172979_010 Hb_012633_050--Hb_172979_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.673514 1.07777 2.46455 1.56856 0.528725 0.779085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.462988 0.718277 0.538403 1.07297 1.86851

CAGE analysis