Hb_000579_080

Information

Type -
Description -
Location Contig579: 123858-127594
Sequence    

Annotation

kegg
ID rcu:RCOM_1595710
description 26S protease regulatory subunit S10b, putative (EC:3.6.4.3)
nr
ID XP_012071930.1
description PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
swissprot
ID Q9MAK9
description 26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=1 SV=1
trembl
ID A0A067KQY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04482 PE=3 SV=1
Gene Ontology
ID GO:0000502
description 26s protease regulatory subunit 10b homolog a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49773: 123866-127506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000579_080 0.0 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
2 Hb_000926_060 0.0596758171 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001504_010 0.0668650036 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
4 Hb_012633_050 0.0691253831 - - zinc finger protein, putative [Ricinus communis]
5 Hb_000229_050 0.069910314 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
6 Hb_008206_080 0.0743516883 - - PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Jatropha curcas]
7 Hb_008304_020 0.0744278765 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
8 Hb_002684_020 0.0762891411 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
9 Hb_007483_070 0.0775286961 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
10 Hb_000120_890 0.0777129451 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
11 Hb_006438_020 0.080109445 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
12 Hb_000739_240 0.0802678885 - - PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X1 [Jatropha curcas]
13 Hb_011716_010 0.0815404528 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
14 Hb_001703_040 0.0847444431 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
15 Hb_000163_260 0.08596875 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
16 Hb_021596_020 0.0887496356 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
17 Hb_001053_190 0.0887908036 - - ADP,ATP carrier protein, putative [Ricinus communis]
18 Hb_000880_070 0.0897933708 - - gamma-tubulin complex component, putative [Ricinus communis]
19 Hb_000724_020 0.0899323117 transcription factor TF Family: PHD PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
20 Hb_000029_400 0.0905479034 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000579_080 Hb_000579_080 Hb_000926_060 Hb_000926_060 Hb_000579_080--Hb_000926_060 Hb_001504_010 Hb_001504_010 Hb_000579_080--Hb_001504_010 Hb_012633_050 Hb_012633_050 Hb_000579_080--Hb_012633_050 Hb_000229_050 Hb_000229_050 Hb_000579_080--Hb_000229_050 Hb_008206_080 Hb_008206_080 Hb_000579_080--Hb_008206_080 Hb_008304_020 Hb_008304_020 Hb_000579_080--Hb_008304_020 Hb_070624_010 Hb_070624_010 Hb_000926_060--Hb_070624_010 Hb_003680_220 Hb_003680_220 Hb_000926_060--Hb_003680_220 Hb_000500_220 Hb_000500_220 Hb_000926_060--Hb_000500_220 Hb_008725_270 Hb_008725_270 Hb_000926_060--Hb_008725_270 Hb_000358_210 Hb_000358_210 Hb_000926_060--Hb_000358_210 Hb_007483_070 Hb_007483_070 Hb_001504_010--Hb_007483_070 Hb_021596_020 Hb_021596_020 Hb_001504_010--Hb_021596_020 Hb_000163_260 Hb_000163_260 Hb_001504_010--Hb_000163_260 Hb_001504_010--Hb_008304_020 Hb_000815_300 Hb_000815_300 Hb_001504_010--Hb_000815_300 Hb_012633_050--Hb_001504_010 Hb_006438_020 Hb_006438_020 Hb_012633_050--Hb_006438_020 Hb_012633_050--Hb_000229_050 Hb_012633_050--Hb_008206_080 Hb_172979_010 Hb_172979_010 Hb_012633_050--Hb_172979_010 Hb_000229_050--Hb_008206_080 Hb_011716_010 Hb_011716_010 Hb_000229_050--Hb_011716_010 Hb_000739_240 Hb_000739_240 Hb_000229_050--Hb_000739_240 Hb_000101_390 Hb_000101_390 Hb_000229_050--Hb_000101_390 Hb_159809_070 Hb_159809_070 Hb_008206_080--Hb_159809_070 Hb_008206_080--Hb_008304_020 Hb_008206_080--Hb_000101_390 Hb_001635_110 Hb_001635_110 Hb_008304_020--Hb_001635_110 Hb_006189_020 Hb_006189_020 Hb_008304_020--Hb_006189_020 Hb_003098_070 Hb_003098_070 Hb_008304_020--Hb_003098_070 Hb_008304_020--Hb_007483_070 Hb_008304_020--Hb_159809_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1114 14.7564 50.4416 27.3934 12.7975 11.2334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4925 13.954 14.2838 28.3494 29.2287

CAGE analysis