Hb_159809_070

Information

Type -
Description -
Location Contig159809: 104385-119559
Sequence    

Annotation

kegg
ID rcu:RCOM_0938150
description phospholipase A-2-activating protein, putative
nr
ID XP_002519096.1
description phospholipase A-2-activating protein, putative [Ricinus communis]
swissprot
ID P27612
description Phospholipase A-2-activating protein OS=Mus musculus GN=Plaa PE=1 SV=4
trembl
ID B9RZC7
description Phospholipase A-2-activating protein, putative OS=Ricinus communis GN=RCOM_0938150 PE=4 SV=1
Gene Ontology
ID GO:0005829
description phospholipase a-2-activating

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14251: 104560-119536
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159809_070 0.0 - - phospholipase A-2-activating protein, putative [Ricinus communis]
2 Hb_001227_120 0.055379331 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
3 Hb_000078_140 0.0623997762 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
4 Hb_079526_040 0.0651637437 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
5 Hb_065968_010 0.0653874324 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
6 Hb_006189_020 0.0665328529 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
7 Hb_008304_020 0.0687993854 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
8 Hb_000702_090 0.0704127881 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
9 Hb_000703_190 0.0704245692 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
10 Hb_008289_040 0.0716526723 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
11 Hb_003098_070 0.0725549027 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
12 Hb_001703_050 0.073673338 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
13 Hb_000260_470 0.0740465813 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
14 Hb_004228_120 0.0747837823 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
15 Hb_006824_010 0.0751035136 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
16 Hb_002686_200 0.075710634 - - glucosidase II beta subunit, putative [Ricinus communis]
17 Hb_001279_190 0.0759111689 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
18 Hb_000477_050 0.0761865529 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
19 Hb_001269_130 0.0762349539 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
20 Hb_008206_080 0.0777768037 - - PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Jatropha curcas]

Gene co-expression network

sample Hb_159809_070 Hb_159809_070 Hb_001227_120 Hb_001227_120 Hb_159809_070--Hb_001227_120 Hb_000078_140 Hb_000078_140 Hb_159809_070--Hb_000078_140 Hb_079526_040 Hb_079526_040 Hb_159809_070--Hb_079526_040 Hb_065968_010 Hb_065968_010 Hb_159809_070--Hb_065968_010 Hb_006189_020 Hb_006189_020 Hb_159809_070--Hb_006189_020 Hb_008304_020 Hb_008304_020 Hb_159809_070--Hb_008304_020 Hb_001279_190 Hb_001279_190 Hb_001227_120--Hb_001279_190 Hb_000019_190 Hb_000019_190 Hb_001227_120--Hb_000019_190 Hb_023313_040 Hb_023313_040 Hb_001227_120--Hb_023313_040 Hb_000702_090 Hb_000702_090 Hb_001227_120--Hb_000702_090 Hb_081599_010 Hb_081599_010 Hb_001227_120--Hb_081599_010 Hb_000139_080 Hb_000139_080 Hb_000078_140--Hb_000139_080 Hb_000078_140--Hb_079526_040 Hb_074197_040 Hb_074197_040 Hb_000078_140--Hb_074197_040 Hb_032202_220 Hb_032202_220 Hb_000078_140--Hb_032202_220 Hb_003098_070 Hb_003098_070 Hb_000078_140--Hb_003098_070 Hb_001195_400 Hb_001195_400 Hb_000078_140--Hb_001195_400 Hb_001518_080 Hb_001518_080 Hb_079526_040--Hb_001518_080 Hb_003581_200 Hb_003581_200 Hb_079526_040--Hb_003581_200 Hb_000046_500 Hb_000046_500 Hb_079526_040--Hb_000046_500 Hb_005650_010 Hb_005650_010 Hb_079526_040--Hb_005650_010 Hb_002686_200 Hb_002686_200 Hb_065968_010--Hb_002686_200 Hb_003605_020 Hb_003605_020 Hb_065968_010--Hb_003605_020 Hb_002552_040 Hb_002552_040 Hb_065968_010--Hb_002552_040 Hb_065968_010--Hb_074197_040 Hb_001957_010 Hb_001957_010 Hb_065968_010--Hb_001957_010 Hb_033312_040 Hb_033312_040 Hb_006189_020--Hb_033312_040 Hb_000409_050 Hb_000409_050 Hb_006189_020--Hb_000409_050 Hb_004333_040 Hb_004333_040 Hb_006189_020--Hb_004333_040 Hb_001817_170 Hb_001817_170 Hb_006189_020--Hb_001817_170 Hb_000510_360 Hb_000510_360 Hb_006189_020--Hb_000510_360 Hb_006189_020--Hb_000139_080 Hb_001635_110 Hb_001635_110 Hb_008304_020--Hb_001635_110 Hb_008304_020--Hb_006189_020 Hb_008304_020--Hb_003098_070 Hb_007483_070 Hb_007483_070 Hb_008304_020--Hb_007483_070 Hb_001504_010 Hb_001504_010 Hb_008304_020--Hb_001504_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.90684 9.15634 20.3898 19.1481 9.03475 9.27401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.8045 9.08876 10.2352 17.5664 14.3114

CAGE analysis