Hb_002552_040

Information

Type -
Description -
Location Contig2552: 57464-64003
Sequence    

Annotation

kegg
ID rcu:RCOM_0509910
description ring finger protein, putative
nr
ID XP_012081109.1
description PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
swissprot
ID Q9WTV7
description E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
trembl
ID A0A067K232
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16964 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26624: 58459-58811 , PASA_asmbl_26625: 59690-59975 , PASA_asmbl_26626: 60740-60952 , PASA_asmbl_26627: 61955-64072
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002552_040 0.0 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
2 Hb_000815_300 0.0501906924 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
3 Hb_002687_180 0.0621446083 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
4 Hb_004228_120 0.0668451741 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
5 Hb_001279_190 0.0670898097 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
6 Hb_065968_010 0.0673843352 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
7 Hb_006970_020 0.0691095994 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
8 Hb_008289_040 0.071025179 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
9 Hb_000406_210 0.0727236188 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
10 Hb_005846_050 0.0742500742 - - PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
11 Hb_002445_030 0.0763846772 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
12 Hb_002687_200 0.0778746537 - - conserved hypothetical protein [Ricinus communis]
13 Hb_159809_070 0.0781641225 - - phospholipase A-2-activating protein, putative [Ricinus communis]
14 Hb_001250_050 0.0784707749 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
15 Hb_001227_120 0.0786984568 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
16 Hb_000665_170 0.0792180481 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
17 Hb_019654_020 0.0792831529 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
18 Hb_003777_030 0.0792875372 - - Exocyst complex component, putative [Ricinus communis]
19 Hb_001246_130 0.0794156663 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
20 Hb_002740_080 0.0797770306 - - flap endonuclease-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_002552_040 Hb_002552_040 Hb_000815_300 Hb_000815_300 Hb_002552_040--Hb_000815_300 Hb_002687_180 Hb_002687_180 Hb_002552_040--Hb_002687_180 Hb_004228_120 Hb_004228_120 Hb_002552_040--Hb_004228_120 Hb_001279_190 Hb_001279_190 Hb_002552_040--Hb_001279_190 Hb_065968_010 Hb_065968_010 Hb_002552_040--Hb_065968_010 Hb_006970_020 Hb_006970_020 Hb_002552_040--Hb_006970_020 Hb_000815_300--Hb_006970_020 Hb_000406_210 Hb_000406_210 Hb_000815_300--Hb_000406_210 Hb_000078_140 Hb_000078_140 Hb_000815_300--Hb_000078_140 Hb_001141_240 Hb_001141_240 Hb_000815_300--Hb_001141_240 Hb_074197_040 Hb_074197_040 Hb_000815_300--Hb_074197_040 Hb_002687_180--Hb_001279_190 Hb_002687_180--Hb_004228_120 Hb_001250_050 Hb_001250_050 Hb_002687_180--Hb_001250_050 Hb_002304_050 Hb_002304_050 Hb_002687_180--Hb_002304_050 Hb_005741_040 Hb_005741_040 Hb_002687_180--Hb_005741_040 Hb_004228_120--Hb_001279_190 Hb_159809_070 Hb_159809_070 Hb_004228_120--Hb_159809_070 Hb_001227_120 Hb_001227_120 Hb_004228_120--Hb_001227_120 Hb_011716_010 Hb_011716_010 Hb_004228_120--Hb_011716_010 Hb_007483_070 Hb_007483_070 Hb_001279_190--Hb_007483_070 Hb_001279_190--Hb_011716_010 Hb_001279_190--Hb_001250_050 Hb_001279_190--Hb_001227_120 Hb_002686_200 Hb_002686_200 Hb_065968_010--Hb_002686_200 Hb_003605_020 Hb_003605_020 Hb_065968_010--Hb_003605_020 Hb_065968_010--Hb_159809_070 Hb_065968_010--Hb_074197_040 Hb_001957_010 Hb_001957_010 Hb_065968_010--Hb_001957_010 Hb_011377_040 Hb_011377_040 Hb_006970_020--Hb_011377_040 Hb_002684_020 Hb_002684_020 Hb_006970_020--Hb_002684_020 Hb_006970_020--Hb_000078_140 Hb_000862_100 Hb_000862_100 Hb_006970_020--Hb_000862_100 Hb_015884_020 Hb_015884_020 Hb_006970_020--Hb_015884_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.84419 4.98232 11.3516 11.8485 3.8198 4.4703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.88435 3.33853 4.36876 7.97314 8.58858

CAGE analysis