Hb_001279_190

Information

Type -
Description -
Location Contig1279: 181902-188582
Sequence    

Annotation

kegg
ID rcu:RCOM_0530980
description hypothetical protein
nr
ID XP_012071409.1
description PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
swissprot
ID Q8GUM4
description Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana GN=At3g27390 PE=1 SV=2
trembl
ID A0A067LD94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10202 PE=4 SV=1
Gene Ontology
ID GO:0003700
description uncharacterized membrane protein at3g27390 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08598: 182852-188422 , PASA_asmbl_08599: 185441-185734
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_190 0.0 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
2 Hb_007483_070 0.0449988985 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
3 Hb_002687_180 0.0552807829 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
4 Hb_004228_120 0.05840575 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
5 Hb_011716_010 0.0595710435 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
6 Hb_001250_050 0.062916398 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
7 Hb_001227_120 0.0629378981 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
8 Hb_002552_040 0.0670898097 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
9 Hb_003498_100 0.067838744 - - component of oligomeric golgi complex, putative [Ricinus communis]
10 Hb_001504_010 0.0692847692 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
11 Hb_000227_390 0.0716168196 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
12 Hb_002740_080 0.0723593073 - - flap endonuclease-1, putative [Ricinus communis]
13 Hb_000815_300 0.072600586 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
14 Hb_000120_890 0.0742804271 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
15 Hb_008289_040 0.0753376736 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
16 Hb_159809_070 0.0759111689 - - phospholipase A-2-activating protein, putative [Ricinus communis]
17 Hb_008304_020 0.0805094278 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
18 Hb_003540_050 0.0809518731 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
19 Hb_081599_010 0.082125826 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000703_190 0.0821416117 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001279_190 Hb_001279_190 Hb_007483_070 Hb_007483_070 Hb_001279_190--Hb_007483_070 Hb_002687_180 Hb_002687_180 Hb_001279_190--Hb_002687_180 Hb_004228_120 Hb_004228_120 Hb_001279_190--Hb_004228_120 Hb_011716_010 Hb_011716_010 Hb_001279_190--Hb_011716_010 Hb_001250_050 Hb_001250_050 Hb_001279_190--Hb_001250_050 Hb_001227_120 Hb_001227_120 Hb_001279_190--Hb_001227_120 Hb_001504_010 Hb_001504_010 Hb_007483_070--Hb_001504_010 Hb_008304_020 Hb_008304_020 Hb_007483_070--Hb_008304_020 Hb_000815_300 Hb_000815_300 Hb_007483_070--Hb_000815_300 Hb_000120_890 Hb_000120_890 Hb_007483_070--Hb_000120_890 Hb_007483_070--Hb_011716_010 Hb_002687_180--Hb_004228_120 Hb_002687_180--Hb_001250_050 Hb_002304_050 Hb_002304_050 Hb_002687_180--Hb_002304_050 Hb_002552_040 Hb_002552_040 Hb_002687_180--Hb_002552_040 Hb_005741_040 Hb_005741_040 Hb_002687_180--Hb_005741_040 Hb_004228_120--Hb_002552_040 Hb_159809_070 Hb_159809_070 Hb_004228_120--Hb_159809_070 Hb_004228_120--Hb_001227_120 Hb_004228_120--Hb_011716_010 Hb_011716_010--Hb_002687_180 Hb_011716_010--Hb_001504_010 Hb_006438_020 Hb_006438_020 Hb_011716_010--Hb_006438_020 Hb_003777_030 Hb_003777_030 Hb_001250_050--Hb_003777_030 Hb_000753_160 Hb_000753_160 Hb_001250_050--Hb_000753_160 Hb_002739_120 Hb_002739_120 Hb_001250_050--Hb_002739_120 Hb_008289_040 Hb_008289_040 Hb_001250_050--Hb_008289_040 Hb_001227_120--Hb_159809_070 Hb_000019_190 Hb_000019_190 Hb_001227_120--Hb_000019_190 Hb_023313_040 Hb_023313_040 Hb_001227_120--Hb_023313_040 Hb_000702_090 Hb_000702_090 Hb_001227_120--Hb_000702_090 Hb_081599_010 Hb_081599_010 Hb_001227_120--Hb_081599_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.0623 3.91295 8.39559 7.96236 3.13273 2.4075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.64923 3.05839 2.55134 5.40452 4.65348

CAGE analysis