Hb_000753_160

Information

Type -
Description -
Location Contig753: 159090-166615
Sequence    

Annotation

kegg
ID pop:POPTR_0004s10680g
description POPTRDRAFT_199111; hypothetical protein
nr
ID XP_012080431.1
description PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K8P9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11764 PE=4 SV=1
Gene Ontology
ID GO:0015630
description movement protein binding protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56916: 158623-159088 , PASA_asmbl_56917: 159334-164683 , PASA_asmbl_56918: 164714-166532
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000753_160 0.0 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
2 Hb_002304_050 0.0510283292 - - pyruvate kinase, putative [Ricinus communis]
3 Hb_001250_050 0.0682426932 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
4 Hb_007919_110 0.0722925822 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
5 Hb_003449_100 0.0762196951 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
6 Hb_002687_180 0.0812775014 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
7 Hb_001279_190 0.0855881611 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
8 Hb_011716_010 0.0860321281 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
9 Hb_013726_050 0.0878593315 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
10 Hb_003964_080 0.0904822054 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
11 Hb_002740_080 0.0922586183 - - flap endonuclease-1, putative [Ricinus communis]
12 Hb_002272_240 0.0925085189 - - catalytic, putative [Ricinus communis]
13 Hb_002739_120 0.0928126856 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
14 Hb_004724_390 0.0943069854 - - PREDICTED: nicalin-1-like [Populus euphratica]
15 Hb_003540_050 0.0946167312 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
16 Hb_003209_130 0.0948960012 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
17 Hb_018845_010 0.0965843044 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
18 Hb_000703_160 0.0986180689 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
19 Hb_003777_030 0.0987897006 - - Exocyst complex component, putative [Ricinus communis]
20 Hb_012760_030 0.0989594931 - - PREDICTED: probable prolyl 4-hydroxylase 10 [Gossypium raimondii]

Gene co-expression network

sample Hb_000753_160 Hb_000753_160 Hb_002304_050 Hb_002304_050 Hb_000753_160--Hb_002304_050 Hb_001250_050 Hb_001250_050 Hb_000753_160--Hb_001250_050 Hb_007919_110 Hb_007919_110 Hb_000753_160--Hb_007919_110 Hb_003449_100 Hb_003449_100 Hb_000753_160--Hb_003449_100 Hb_002687_180 Hb_002687_180 Hb_000753_160--Hb_002687_180 Hb_001279_190 Hb_001279_190 Hb_000753_160--Hb_001279_190 Hb_013726_050 Hb_013726_050 Hb_002304_050--Hb_013726_050 Hb_002304_050--Hb_002687_180 Hb_002304_050--Hb_003449_100 Hb_002304_050--Hb_001250_050 Hb_002272_240 Hb_002272_240 Hb_002304_050--Hb_002272_240 Hb_003777_030 Hb_003777_030 Hb_001250_050--Hb_003777_030 Hb_001250_050--Hb_002687_180 Hb_001250_050--Hb_001279_190 Hb_002739_120 Hb_002739_120 Hb_001250_050--Hb_002739_120 Hb_008289_040 Hb_008289_040 Hb_001250_050--Hb_008289_040 Hb_007919_110--Hb_003449_100 Hb_007919_110--Hb_002272_240 Hb_012760_030 Hb_012760_030 Hb_007919_110--Hb_012760_030 Hb_003209_130 Hb_003209_130 Hb_007919_110--Hb_003209_130 Hb_006120_050 Hb_006120_050 Hb_007919_110--Hb_006120_050 Hb_000703_160 Hb_000703_160 Hb_003449_100--Hb_000703_160 Hb_002249_020 Hb_002249_020 Hb_003449_100--Hb_002249_020 Hb_000958_080 Hb_000958_080 Hb_003449_100--Hb_000958_080 Hb_002687_180--Hb_001279_190 Hb_004228_120 Hb_004228_120 Hb_002687_180--Hb_004228_120 Hb_002552_040 Hb_002552_040 Hb_002687_180--Hb_002552_040 Hb_005741_040 Hb_005741_040 Hb_002687_180--Hb_005741_040 Hb_007483_070 Hb_007483_070 Hb_001279_190--Hb_007483_070 Hb_001279_190--Hb_004228_120 Hb_011716_010 Hb_011716_010 Hb_001279_190--Hb_011716_010 Hb_001227_120 Hb_001227_120 Hb_001279_190--Hb_001227_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.12339 5.18712 8.92464 10.0375 2.49368 1.89206
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.96485 2.76746 1.96641 4.27012 4.06624

CAGE analysis